miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26255 3' -60 NC_005345.2 + 19832 0.78 0.062318
Target:  5'- cGGGGCGGCCG-ACagcuuccagGCAUCCcggccGCCCCGg -3'
miRNA:   3'- -CCCCGUCGGCaUG---------UGUAGGa----CGGGGC- -5'
26255 3' -60 NC_005345.2 + 43951 0.66 0.427641
Target:  5'- cGGGcCGGCCGUGCcgauGCGUgCaGCCCgGc -3'
miRNA:   3'- cCCC-GUCGGCAUG----UGUAgGaCGGGgC- -5'
26255 3' -60 NC_005345.2 + 40370 0.66 0.437023
Target:  5'- gGGGGCGaucaCCGcGCuCAUCCUGCgcagccucCCCGa -3'
miRNA:   3'- -CCCCGUc---GGCaUGuGUAGGACG--------GGGC- -5'
26255 3' -60 NC_005345.2 + 49144 0.66 0.465859
Target:  5'- cGGGgGGCCGUugACucCCUGaCCUGc -3'
miRNA:   3'- cCCCgUCGGCAugUGuaGGACgGGGC- -5'
26255 3' -60 NC_005345.2 + 31332 0.7 0.267454
Target:  5'- aGGGCGGCCGg--ACGUgaCCaUGCCCCc -3'
miRNA:   3'- cCCCGUCGGCaugUGUA--GG-ACGGGGc -5'
26255 3' -60 NC_005345.2 + 1530 0.7 0.267454
Target:  5'- cGGGGCAGgaUGUGUACGg-CUGCCCCa -3'
miRNA:   3'- -CCCCGUCg-GCAUGUGUagGACGGGGc -5'
26255 3' -60 NC_005345.2 + 9386 0.68 0.3408
Target:  5'- cGGGCAGCCGcuguuCAgCCUGCCgCa -3'
miRNA:   3'- cCCCGUCGGCaugu-GUaGGACGGgGc -5'
26255 3' -60 NC_005345.2 + 27072 0.67 0.365468
Target:  5'- uGGGGCAGaucaCCG-ACGCGUaCCUGUCugCCGu -3'
miRNA:   3'- -CCCCGUC----GGCaUGUGUA-GGACGG--GGC- -5'
26255 3' -60 NC_005345.2 + 10256 0.67 0.37396
Target:  5'- cGGGGCAGCguuCGUuCACG-CCgcgauCCCCGa -3'
miRNA:   3'- -CCCCGUCG---GCAuGUGUaGGac---GGGGC- -5'
26255 3' -60 NC_005345.2 + 17329 0.66 0.418379
Target:  5'- -cGGguGCaCGcACGCAUCCcgGaCCCCGa -3'
miRNA:   3'- ccCCguCG-GCaUGUGUAGGa-C-GGGGC- -5'
26255 3' -60 NC_005345.2 + 3050 0.67 0.391341
Target:  5'- aGGGUcGCCGcgUGgAUGUCCgcgcagGCCCCGg -3'
miRNA:   3'- cCCCGuCGGC--AUgUGUAGGa-----CGGGGC- -5'
26255 3' -60 NC_005345.2 + 24933 0.67 0.37396
Target:  5'- uGGGaGCAGCCGc-CGCGaUCgaacucgGCCCCGa -3'
miRNA:   3'- -CCC-CGUCGGCauGUGUaGGa------CGGGGC- -5'
26255 3' -60 NC_005345.2 + 9203 0.75 0.105992
Target:  5'- cGGGguGCCGUACGCGUaCgUaGUCCCGg -3'
miRNA:   3'- cCCCguCGGCAUGUGUA-GgA-CGGGGC- -5'
26255 3' -60 NC_005345.2 + 10859 0.67 0.400227
Target:  5'- uGGGCGgacuGCCGcacgcgGCGCGUCCcgUGCCCg- -3'
miRNA:   3'- cCCCGU----CGGCa-----UGUGUAGG--ACGGGgc -5'
26255 3' -60 NC_005345.2 + 29986 0.74 0.135587
Target:  5'- cGGGCAGCCGUACGgGcCCggcgacgacGUCCCGg -3'
miRNA:   3'- cCCCGUCGGCAUGUgUaGGa--------CGGGGC- -5'
26255 3' -60 NC_005345.2 + 40755 0.67 0.365468
Target:  5'- uGGGGCGGaCCGUucgGCcgCCgGCCgCGg -3'
miRNA:   3'- -CCCCGUC-GGCAug-UGuaGGaCGGgGC- -5'
26255 3' -60 NC_005345.2 + 29600 0.66 0.418379
Target:  5'- --aGCAGCUGaACACgGUCCUGUCCuCGa -3'
miRNA:   3'- cccCGUCGGCaUGUG-UAGGACGGG-GC- -5'
26255 3' -60 NC_005345.2 + 20427 0.66 0.437023
Target:  5'- uGGGC-GCCGUA-----CCUGCCCCc -3'
miRNA:   3'- cCCCGuCGGCAUguguaGGACGGGGc -5'
26255 3' -60 NC_005345.2 + 43361 0.7 0.253772
Target:  5'- aGGGGguGCCGgucgACGCGUacgccgaCCUGCggaCCGc -3'
miRNA:   3'- -CCCCguCGGCa---UGUGUA-------GGACGg--GGC- -5'
26255 3' -60 NC_005345.2 + 11861 0.68 0.31736
Target:  5'- uGGGCaucGGCCcUGCACGaCgUGCCCCu -3'
miRNA:   3'- cCCCG---UCGGcAUGUGUaGgACGGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.