miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26255 3' -60 NC_005345.2 + 47617 1.09 0.000299
Target:  5'- uGGGGCAGCCGUACACAUCCUGCCCCGc -3'
miRNA:   3'- -CCCCGUCGGCAUGUGUAGGACGGGGC- -5'
26255 3' -60 NC_005345.2 + 19832 0.78 0.062318
Target:  5'- cGGGGCGGCCG-ACagcuuccagGCAUCCcggccGCCCCGg -3'
miRNA:   3'- -CCCCGUCGGCaUG---------UGUAGGa----CGGGGC- -5'
26255 3' -60 NC_005345.2 + 9203 0.75 0.105992
Target:  5'- cGGGguGCCGUACGCGUaCgUaGUCCCGg -3'
miRNA:   3'- cCCCguCGGCAUGUGUA-GgA-CGGGGC- -5'
26255 3' -60 NC_005345.2 + 39042 0.74 0.128415
Target:  5'- uGGGGCAGUCGUcGCGCAUgugCCgcucgGCCCgGa -3'
miRNA:   3'- -CCCCGUCGGCA-UGUGUA---GGa----CGGGgC- -5'
26255 3' -60 NC_005345.2 + 29986 0.74 0.135587
Target:  5'- cGGGCAGCCGUACGgGcCCggcgacgacGUCCCGg -3'
miRNA:   3'- cCCCGUCGGCAUGUgUaGGa--------CGGGGC- -5'
26255 3' -60 NC_005345.2 + 44590 0.74 0.140825
Target:  5'- cGGGcaGCAGUCGUACACgcugccgucguccggGUCgUGCCCCu -3'
miRNA:   3'- -CCC--CGUCGGCAUGUG---------------UAGgACGGGGc -5'
26255 3' -60 NC_005345.2 + 43363 0.72 0.175378
Target:  5'- cGGGGuCGGCCGgguacgGCACGccgagcaccugcgCCUGCgCCCGg -3'
miRNA:   3'- -CCCC-GUCGGCa-----UGUGUa------------GGACG-GGGC- -5'
26255 3' -60 NC_005345.2 + 37992 0.72 0.186837
Target:  5'- cGGGGUgccGCCGUACAUcuugaccaCCgGCCCCGg -3'
miRNA:   3'- -CCCCGu--CGGCAUGUGua------GGaCGGGGC- -5'
26255 3' -60 NC_005345.2 + 41262 0.72 0.196885
Target:  5'- --aGCAGCCGUGCGCcgCCUcggcGUCCCa -3'
miRNA:   3'- cccCGUCGGCAUGUGuaGGA----CGGGGc -5'
26255 3' -60 NC_005345.2 + 445 0.71 0.21284
Target:  5'- cGGGCGGguCCGUgGCGCAUaCCcGCCCCu -3'
miRNA:   3'- cCCCGUC--GGCA-UGUGUA-GGaCGGGGc -5'
26255 3' -60 NC_005345.2 + 29303 0.71 0.230481
Target:  5'- cGGGGCGGCCGggAUGCcuggaagcugucggCC-GCCCCGg -3'
miRNA:   3'- -CCCCGUCGGCa-UGUGua------------GGaCGGGGC- -5'
26255 3' -60 NC_005345.2 + 37284 0.7 0.248087
Target:  5'- aGGGGCAcGUCGUGCAgGgCCgaUGCCCaCGc -3'
miRNA:   3'- -CCCCGU-CGGCAUGUgUaGG--ACGGG-GC- -5'
26255 3' -60 NC_005345.2 + 43361 0.7 0.253772
Target:  5'- aGGGGguGCCGgucgACGCGUacgccgaCCUGCggaCCGc -3'
miRNA:   3'- -CCCCguCGGCa---UGUGUA-------GGACGg--GGC- -5'
26255 3' -60 NC_005345.2 + 7253 0.7 0.260866
Target:  5'- cGGGGCGGCCGaACcgacaaGCGUCgCcGCCCgCGc -3'
miRNA:   3'- -CCCCGUCGGCaUG------UGUAG-GaCGGG-GC- -5'
26255 3' -60 NC_005345.2 + 1530 0.7 0.267454
Target:  5'- cGGGGCAGgaUGUGUACGg-CUGCCCCa -3'
miRNA:   3'- -CCCCGUCg-GCAUGUGUagGACGGGGc -5'
26255 3' -60 NC_005345.2 + 31332 0.7 0.267454
Target:  5'- aGGGCGGCCGg--ACGUgaCCaUGCCCCc -3'
miRNA:   3'- cCCCGUCGGCaugUGUA--GG-ACGGGGc -5'
26255 3' -60 NC_005345.2 + 37793 0.69 0.28732
Target:  5'- cGGGGCugcuGCCGUugGCGgugccgcUCaCUGCUCgCGg -3'
miRNA:   3'- -CCCCGu---CGGCAugUGU-------AG-GACGGG-GC- -5'
26255 3' -60 NC_005345.2 + 11861 0.68 0.31736
Target:  5'- uGGGCaucGGCCcUGCACGaCgUGCCCCu -3'
miRNA:   3'- cCCCG---UCGGcAUGUGUaGgACGGGGc -5'
26255 3' -60 NC_005345.2 + 39211 0.68 0.31736
Target:  5'- cGGGUuggcgaccgucgGGCCG-ACGCcgaCUGCCCCGg -3'
miRNA:   3'- cCCCG------------UCGGCaUGUGuagGACGGGGC- -5'
26255 3' -60 NC_005345.2 + 34799 0.68 0.339999
Target:  5'- cGGGucgcgguccucgcGCAcGCCGUGCg---CCUGCCCCu -3'
miRNA:   3'- -CCC-------------CGU-CGGCAUGuguaGGACGGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.