miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26255 3' -60 NC_005345.2 + 445 0.71 0.21284
Target:  5'- cGGGCGGguCCGUgGCGCAUaCCcGCCCCu -3'
miRNA:   3'- cCCCGUC--GGCA-UGUGUA-GGaCGGGGc -5'
26255 3' -60 NC_005345.2 + 1190 0.66 0.437023
Target:  5'- cGGGCGGCUcgGCA-GUCCgGCCCgCGg -3'
miRNA:   3'- cCCCGUCGGcaUGUgUAGGaCGGG-GC- -5'
26255 3' -60 NC_005345.2 + 1530 0.7 0.267454
Target:  5'- cGGGGCAGgaUGUGUACGg-CUGCCCCa -3'
miRNA:   3'- -CCCCGUCg-GCAUGUGUagGACGGGGc -5'
26255 3' -60 NC_005345.2 + 2539 0.66 0.437023
Target:  5'- cGGGGCAcCCG---GCG-CCgGCCCCGa -3'
miRNA:   3'- -CCCCGUcGGCaugUGUaGGaCGGGGC- -5'
26255 3' -60 NC_005345.2 + 3050 0.67 0.391341
Target:  5'- aGGGUcGCCGcgUGgAUGUCCgcgcagGCCCCGg -3'
miRNA:   3'- cCCCGuCGGC--AUgUGUAGGa-----CGGGGC- -5'
26255 3' -60 NC_005345.2 + 6932 0.67 0.391341
Target:  5'- -cGGCGcGCgCGUACAUGUCCgcgGCCCa- -3'
miRNA:   3'- ccCCGU-CG-GCAUGUGUAGGa--CGGGgc -5'
26255 3' -60 NC_005345.2 + 7253 0.7 0.260866
Target:  5'- cGGGGCGGCCGaACcgacaaGCGUCgCcGCCCgCGc -3'
miRNA:   3'- -CCCCGUCGGCaUG------UGUAG-GaCGGG-GC- -5'
26255 3' -60 NC_005345.2 + 8396 0.67 0.37396
Target:  5'- -cGGCGGCCGaACG-GUCC-GCCCCa -3'
miRNA:   3'- ccCCGUCGGCaUGUgUAGGaCGGGGc -5'
26255 3' -60 NC_005345.2 + 9203 0.75 0.105992
Target:  5'- cGGGguGCCGUACGCGUaCgUaGUCCCGg -3'
miRNA:   3'- cCCCguCGGCAUGUGUA-GgA-CGGGGC- -5'
26255 3' -60 NC_005345.2 + 9386 0.68 0.3408
Target:  5'- cGGGCAGCCGcuguuCAgCCUGCCgCa -3'
miRNA:   3'- cCCCGUCGGCaugu-GUaGGACGGgGc -5'
26255 3' -60 NC_005345.2 + 9926 0.66 0.465859
Target:  5'- cGGGGCAGUCG---GCGUCg-GCCCg- -3'
miRNA:   3'- -CCCCGUCGGCaugUGUAGgaCGGGgc -5'
26255 3' -60 NC_005345.2 + 10256 0.67 0.37396
Target:  5'- cGGGGCAGCguuCGUuCACG-CCgcgauCCCCGa -3'
miRNA:   3'- -CCCCGUCG---GCAuGUGUaGGac---GGGGC- -5'
26255 3' -60 NC_005345.2 + 10859 0.67 0.400227
Target:  5'- uGGGCGgacuGCCGcacgcgGCGCGUCCcgUGCCCg- -3'
miRNA:   3'- cCCCGU----CGGCa-----UGUGUAGG--ACGGGgc -5'
26255 3' -60 NC_005345.2 + 11861 0.68 0.31736
Target:  5'- uGGGCaucGGCCcUGCACGaCgUGCCCCu -3'
miRNA:   3'- cCCCG---UCGGcAUGUGUaGgACGGGGc -5'
26255 3' -60 NC_005345.2 + 12651 0.66 0.46586
Target:  5'- cGGGGCGcggucggccGCCGUugGCGUaCCcGCCgggUCGg -3'
miRNA:   3'- -CCCCGU---------CGGCAugUGUA-GGaCGG---GGC- -5'
26255 3' -60 NC_005345.2 + 13378 0.67 0.37396
Target:  5'- --aGCAGCgCGggaauCGaGUCCUGCCCCGg -3'
miRNA:   3'- cccCGUCG-GCau---GUgUAGGACGGGGC- -5'
26255 3' -60 NC_005345.2 + 13981 0.66 0.437023
Target:  5'- cGGGCuugagcGCCGacuucCACAgCCaUGCCCCGa -3'
miRNA:   3'- cCCCGu-----CGGCau---GUGUaGG-ACGGGGC- -5'
26255 3' -60 NC_005345.2 + 17156 0.66 0.450354
Target:  5'- cGGGGCGGUCGUGCcgacgggggcgGCGuagaagucggcgccuUCCcacaGCCUCGg -3'
miRNA:   3'- -CCCCGUCGGCAUG-----------UGU---------------AGGa---CGGGGC- -5'
26255 3' -60 NC_005345.2 + 17329 0.66 0.418379
Target:  5'- -cGGguGCaCGcACGCAUCCcgGaCCCCGa -3'
miRNA:   3'- ccCCguCG-GCaUGUGUAGGa-C-GGGGC- -5'
26255 3' -60 NC_005345.2 + 17578 0.66 0.456136
Target:  5'- -cGGCagagcugcaucaGGUCGUGCGCGUCCU-CCUCGc -3'
miRNA:   3'- ccCCG------------UCGGCAUGUGUAGGAcGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.