miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26255 3' -60 NC_005345.2 + 49144 0.66 0.465859
Target:  5'- cGGGgGGCCGUugACucCCUGaCCUGc -3'
miRNA:   3'- cCCCgUCGGCAugUGuaGGACgGGGC- -5'
26255 3' -60 NC_005345.2 + 48699 0.66 0.464882
Target:  5'- aGGGGCGgguaugcGCCacggacccgcccGUACuACGUCC-GCCCCc -3'
miRNA:   3'- -CCCCGU-------CGG------------CAUG-UGUAGGaCGGGGc -5'
26255 3' -60 NC_005345.2 + 47617 1.09 0.000299
Target:  5'- uGGGGCAGCCGUACACAUCCUGCCCCGc -3'
miRNA:   3'- -CCCCGUCGGCAUGUGUAGGACGGGGC- -5'
26255 3' -60 NC_005345.2 + 47360 0.66 0.446523
Target:  5'- gGGGGUacGGUCGgucgaGCggCCUGCCCUc -3'
miRNA:   3'- -CCCCG--UCGGCaug--UGuaGGACGGGGc -5'
26255 3' -60 NC_005345.2 + 47154 0.66 0.460012
Target:  5'- gGGGGC-GCUGUgagcgccgccucgcgGCACugccaGUUCUGCCCgGa -3'
miRNA:   3'- -CCCCGuCGGCA---------------UGUG-----UAGGACGGGgC- -5'
26255 3' -60 NC_005345.2 + 46033 0.67 0.37396
Target:  5'- cGGGGCGGCCccucggUAUGUCCgggGCCCg- -3'
miRNA:   3'- -CCCCGUCGGcau---GUGUAGGa--CGGGgc -5'
26255 3' -60 NC_005345.2 + 44665 0.66 0.437023
Target:  5'- uGGGCAcggcucgucgaGCCGgACACGgccgCCggGCCCCc -3'
miRNA:   3'- cCCCGU-----------CGGCaUGUGUa---GGa-CGGGGc -5'
26255 3' -60 NC_005345.2 + 44590 0.74 0.140825
Target:  5'- cGGGcaGCAGUCGUACACgcugccgucguccggGUCgUGCCCCu -3'
miRNA:   3'- -CCC--CGUCGGCAUGUG---------------UAGgACGGGGc -5'
26255 3' -60 NC_005345.2 + 43951 0.66 0.427641
Target:  5'- cGGGcCGGCCGUGCcgauGCGUgCaGCCCgGc -3'
miRNA:   3'- cCCC-GUCGGCAUG----UGUAgGaCGGGgC- -5'
26255 3' -60 NC_005345.2 + 43363 0.72 0.175378
Target:  5'- cGGGGuCGGCCGgguacgGCACGccgagcaccugcgCCUGCgCCCGg -3'
miRNA:   3'- -CCCC-GUCGGCa-----UGUGUa------------GGACG-GGGC- -5'
26255 3' -60 NC_005345.2 + 43361 0.7 0.253772
Target:  5'- aGGGGguGCCGgucgACGCGUacgccgaCCUGCggaCCGc -3'
miRNA:   3'- -CCCCguCGGCa---UGUGUA-------GGACGg--GGC- -5'
26255 3' -60 NC_005345.2 + 42870 0.66 0.465859
Target:  5'- -aGGCGGCCccGCACGUgCUGUgggaCCCGu -3'
miRNA:   3'- ccCCGUCGGcaUGUGUAgGACG----GGGC- -5'
26255 3' -60 NC_005345.2 + 42057 0.67 0.391341
Target:  5'- cGGGCcguuucgaccGUCGUGCACuUCCggGCCUCGg -3'
miRNA:   3'- cCCCGu---------CGGCAUGUGuAGGa-CGGGGC- -5'
26255 3' -60 NC_005345.2 + 41585 0.66 0.42485
Target:  5'- cGGGCGugcucggucgugauGCCGUGCACggCCgucGCaCCCu -3'
miRNA:   3'- cCCCGU--------------CGGCAUGUGuaGGa--CG-GGGc -5'
26255 3' -60 NC_005345.2 + 41262 0.72 0.196885
Target:  5'- --aGCAGCCGUGCGCcgCCUcggcGUCCCa -3'
miRNA:   3'- cccCGUCGGCAUGUGuaGGA----CGGGGc -5'
26255 3' -60 NC_005345.2 + 40871 0.68 0.3408
Target:  5'- aGGGCGGCCGcuucgaccggGCACAUgCUGCggacguugaUCCGg -3'
miRNA:   3'- cCCCGUCGGCa---------UGUGUAgGACG---------GGGC- -5'
26255 3' -60 NC_005345.2 + 40755 0.67 0.365468
Target:  5'- uGGGGCGGaCCGUucgGCcgCCgGCCgCGg -3'
miRNA:   3'- -CCCCGUC-GGCAug-UGuaGGaCGGgGC- -5'
26255 3' -60 NC_005345.2 + 40370 0.66 0.437023
Target:  5'- gGGGGCGaucaCCGcGCuCAUCCUGCgcagccucCCCGa -3'
miRNA:   3'- -CCCCGUc---GGCaUGuGUAGGACG--------GGGC- -5'
26255 3' -60 NC_005345.2 + 39211 0.68 0.31736
Target:  5'- cGGGUuggcgaccgucgGGCCG-ACGCcgaCUGCCCCGg -3'
miRNA:   3'- cCCCG------------UCGGCaUGUGuagGACGGGGC- -5'
26255 3' -60 NC_005345.2 + 39042 0.74 0.128415
Target:  5'- uGGGGCAGUCGUcGCGCAUgugCCgcucgGCCCgGa -3'
miRNA:   3'- -CCCCGUCGGCA-UGUGUA---GGa----CGGGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.