Results 21 - 40 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26255 | 3' | -60 | NC_005345.2 | + | 19832 | 0.78 | 0.062318 |
Target: 5'- cGGGGCGGCCG-ACagcuuccagGCAUCCcggccGCCCCGg -3' miRNA: 3'- -CCCCGUCGGCaUG---------UGUAGGa----CGGGGC- -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 20427 | 0.66 | 0.437023 |
Target: 5'- uGGGC-GCCGUA-----CCUGCCCCc -3' miRNA: 3'- cCCCGuCGGCAUguguaGGACGGGGc -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 22068 | 0.67 | 0.365468 |
Target: 5'- -cGGCAGaCagGUACGCGUCggugauCUGCCCCa -3' miRNA: 3'- ccCCGUC-Gg-CAUGUGUAG------GACGGGGc -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 24272 | 0.67 | 0.398439 |
Target: 5'- aGGcGGCAGCCGaucagcgcgguCGCGUCCgucacGCCgCGg -3' miRNA: 3'- -CC-CCGUCGGCau---------GUGUAGGa----CGGgGC- -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 24933 | 0.67 | 0.37396 |
Target: 5'- uGGGaGCAGCCGc-CGCGaUCgaacucgGCCCCGa -3' miRNA: 3'- -CCC-CGUCGGCauGUGUaGGa------CGGGGC- -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 25092 | 0.66 | 0.46586 |
Target: 5'- -cGGCucGCCGUACGCGUCCca-UCCGu -3' miRNA: 3'- ccCCGu-CGGCAUGUGUAGGacgGGGC- -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 27072 | 0.67 | 0.365468 |
Target: 5'- uGGGGCAGaucaCCG-ACGCGUaCCUGUCugCCGu -3' miRNA: 3'- -CCCCGUC----GGCaUGUGUA-GGACGG--GGC- -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 27696 | 0.66 | 0.437023 |
Target: 5'- cGGGCGcGCCG-ACACGgcagcCCUGCaaccccuaCCCGa -3' miRNA: 3'- cCCCGU-CGGCaUGUGUa----GGACG--------GGGC- -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 29303 | 0.71 | 0.230481 |
Target: 5'- cGGGGCGGCCGggAUGCcuggaagcugucggCC-GCCCCGg -3' miRNA: 3'- -CCCCGUCGGCa-UGUGua------------GGaCGGGGC- -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 29600 | 0.66 | 0.418379 |
Target: 5'- --aGCAGCUGaACACgGUCCUGUCCuCGa -3' miRNA: 3'- cccCGUCGGCaUGUG-UAGGACGGG-GC- -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 29986 | 0.74 | 0.135587 |
Target: 5'- cGGGCAGCCGUACGgGcCCggcgacgacGUCCCGg -3' miRNA: 3'- cCCCGUCGGCAUGUgUaGGa--------CGGGGC- -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 31332 | 0.7 | 0.267454 |
Target: 5'- aGGGCGGCCGg--ACGUgaCCaUGCCCCc -3' miRNA: 3'- cCCCGUCGGCaugUGUA--GG-ACGGGGc -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 34151 | 0.67 | 0.382585 |
Target: 5'- cGGGCAGUCG-ACGgAUCCgaGUCCuCGg -3' miRNA: 3'- cCCCGUCGGCaUGUgUAGGa-CGGG-GC- -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 34799 | 0.68 | 0.339999 |
Target: 5'- cGGGucgcgguccucgcGCAcGCCGUGCg---CCUGCCCCu -3' miRNA: 3'- -CCC-------------CGU-CGGCAUGuguaGGACGGGGc -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 36493 | 0.67 | 0.408333 |
Target: 5'- gGGGGCgcaguucAGCCaGUGCGCccgcUCCgagGCCCgGu -3' miRNA: 3'- -CCCCG-------UCGG-CAUGUGu---AGGa--CGGGgC- -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 37284 | 0.7 | 0.248087 |
Target: 5'- aGGGGCAcGUCGUGCAgGgCCgaUGCCCaCGc -3' miRNA: 3'- -CCCCGU-CGGCAUGUgUaGG--ACGGG-GC- -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 37793 | 0.69 | 0.28732 |
Target: 5'- cGGGGCugcuGCCGUugGCGgugccgcUCaCUGCUCgCGg -3' miRNA: 3'- -CCCCGu---CGGCAugUGU-------AG-GACGGG-GC- -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 37992 | 0.72 | 0.186837 |
Target: 5'- cGGGGUgccGCCGUACAUcuugaccaCCgGCCCCGg -3' miRNA: 3'- -CCCCGu--CGGCAUGUGua------GGaCGGGGC- -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 39042 | 0.74 | 0.128415 |
Target: 5'- uGGGGCAGUCGUcGCGCAUgugCCgcucgGCCCgGa -3' miRNA: 3'- -CCCCGUCGGCA-UGUGUA---GGa----CGGGgC- -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 39211 | 0.68 | 0.31736 |
Target: 5'- cGGGUuggcgaccgucgGGCCG-ACGCcgaCUGCCCCGg -3' miRNA: 3'- cCCCG------------UCGGCaUGUGuagGACGGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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