miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26255 3' -60 NC_005345.2 + 7253 0.7 0.260866
Target:  5'- cGGGGCGGCCGaACcgacaaGCGUCgCcGCCCgCGc -3'
miRNA:   3'- -CCCCGUCGGCaUG------UGUAG-GaCGGG-GC- -5'
26255 3' -60 NC_005345.2 + 8396 0.67 0.37396
Target:  5'- -cGGCGGCCGaACG-GUCC-GCCCCa -3'
miRNA:   3'- ccCCGUCGGCaUGUgUAGGaCGGGGc -5'
26255 3' -60 NC_005345.2 + 46033 0.67 0.37396
Target:  5'- cGGGGCGGCCccucggUAUGUCCgggGCCCg- -3'
miRNA:   3'- -CCCCGUCGGcau---GUGUAGGa--CGGGgc -5'
26255 3' -60 NC_005345.2 + 13378 0.67 0.37396
Target:  5'- --aGCAGCgCGggaauCGaGUCCUGCCCCGg -3'
miRNA:   3'- cccCGUCG-GCau---GUgUAGGACGGGGC- -5'
26255 3' -60 NC_005345.2 + 22068 0.67 0.365468
Target:  5'- -cGGCAGaCagGUACGCGUCggugauCUGCCCCa -3'
miRNA:   3'- ccCCGUC-Gg-CAUGUGUAG------GACGGGGc -5'
26255 3' -60 NC_005345.2 + 40871 0.68 0.3408
Target:  5'- aGGGCGGCCGcuucgaccggGCACAUgCUGCggacguugaUCCGg -3'
miRNA:   3'- cCCCGUCGGCa---------UGUGUAgGACG---------GGGC- -5'
26255 3' -60 NC_005345.2 + 34799 0.68 0.339999
Target:  5'- cGGGucgcgguccucgcGCAcGCCGUGCg---CCUGCCCCu -3'
miRNA:   3'- -CCC-------------CGU-CGGCAUGuguaGGACGGGGc -5'
26255 3' -60 NC_005345.2 + 39211 0.68 0.31736
Target:  5'- cGGGUuggcgaccgucgGGCCG-ACGCcgaCUGCCCCGg -3'
miRNA:   3'- cCCCG------------UCGGCaUGUGuagGACGGGGC- -5'
26255 3' -60 NC_005345.2 + 37793 0.69 0.28732
Target:  5'- cGGGGCugcuGCCGUugGCGgugccgcUCaCUGCUCgCGg -3'
miRNA:   3'- -CCCCGu---CGGCAugUGU-------AG-GACGGG-GC- -5'
26255 3' -60 NC_005345.2 + 6932 0.67 0.391341
Target:  5'- -cGGCGcGCgCGUACAUGUCCgcgGCCCa- -3'
miRNA:   3'- ccCCGU-CG-GCAUGUGUAGGa--CGGGgc -5'
26255 3' -60 NC_005345.2 + 42057 0.67 0.391341
Target:  5'- cGGGCcguuucgaccGUCGUGCACuUCCggGCCUCGg -3'
miRNA:   3'- cCCCGu---------CGGCAUGUGuAGGa-CGGGGC- -5'
26255 3' -60 NC_005345.2 + 24272 0.67 0.398439
Target:  5'- aGGcGGCAGCCGaucagcgcgguCGCGUCCgucacGCCgCGg -3'
miRNA:   3'- -CC-CCGUCGGCau---------GUGUAGGa----CGGgGC- -5'
26255 3' -60 NC_005345.2 + 12651 0.66 0.46586
Target:  5'- cGGGGCGcggucggccGCCGUugGCGUaCCcGCCgggUCGg -3'
miRNA:   3'- -CCCCGU---------CGGCAugUGUA-GGaCGG---GGC- -5'
26255 3' -60 NC_005345.2 + 17578 0.66 0.456136
Target:  5'- -cGGCagagcugcaucaGGUCGUGCGCGUCCU-CCUCGc -3'
miRNA:   3'- ccCCG------------UCGGCAUGUGUAGGAcGGGGC- -5'
26255 3' -60 NC_005345.2 + 17156 0.66 0.450354
Target:  5'- cGGGGCGGUCGUGCcgacgggggcgGCGuagaagucggcgccuUCCcacaGCCUCGg -3'
miRNA:   3'- -CCCCGUCGGCAUG-----------UGU---------------AGGa---CGGGGC- -5'
26255 3' -60 NC_005345.2 + 47360 0.66 0.446523
Target:  5'- gGGGGUacGGUCGgucgaGCggCCUGCCCUc -3'
miRNA:   3'- -CCCCG--UCGGCaug--UGuaGGACGGGGc -5'
26255 3' -60 NC_005345.2 + 13981 0.66 0.437023
Target:  5'- cGGGCuugagcGCCGacuucCACAgCCaUGCCCCGa -3'
miRNA:   3'- cCCCGu-----CGGCau---GUGUaGG-ACGGGGC- -5'
26255 3' -60 NC_005345.2 + 1190 0.66 0.437023
Target:  5'- cGGGCGGCUcgGCA-GUCCgGCCCgCGg -3'
miRNA:   3'- cCCCGUCGGcaUGUgUAGGaCGGG-GC- -5'
26255 3' -60 NC_005345.2 + 41585 0.66 0.42485
Target:  5'- cGGGCGugcucggucgugauGCCGUGCACggCCgucGCaCCCu -3'
miRNA:   3'- cCCCGU--------------CGGCAUGUGuaGGa--CG-GGGc -5'
26255 3' -60 NC_005345.2 + 36493 0.67 0.408333
Target:  5'- gGGGGCgcaguucAGCCaGUGCGCccgcUCCgagGCCCgGu -3'
miRNA:   3'- -CCCCG-------UCGG-CAUGUGu---AGGa--CGGGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.