Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26255 | 5' | -58.2 | NC_005345.2 | + | 4493 | 0.69 | 0.345331 |
Target: 5'- gGACGGCacGGAGGAGCcGACcGG-GAUCg -3' miRNA: 3'- -UUGUCG--CCUCCUCGcCUGuCCaCUGG- -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 26872 | 0.7 | 0.31345 |
Target: 5'- cGACAGCGGcGGuGCGGucgAUGGGUGAg- -3' miRNA: 3'- -UUGUCGCCuCCuCGCC---UGUCCACUgg -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 27573 | 0.7 | 0.31345 |
Target: 5'- -cCGGCGGccGGGCGccggauuaccGGCAGGUGAUCa -3' miRNA: 3'- uuGUCGCCucCUCGC----------CUGUCCACUGG- -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 25634 | 0.7 | 0.305837 |
Target: 5'- -cCAGCGGaAGGcGCGGACGaacuucuGUGGCCu -3' miRNA: 3'- uuGUCGCC-UCCuCGCCUGUc------CACUGG- -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 12384 | 0.7 | 0.305083 |
Target: 5'- cGCAGCGGAGGGGaaGGCAGcggcgaggcgcgaGUcGGCCg -3' miRNA: 3'- uUGUCGCCUCCUCgcCUGUC-------------CA-CUGG- -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 2889 | 0.7 | 0.298365 |
Target: 5'- cGCGGCGGuGGccucgacgAGCGGAUcGGcgGACCg -3' miRNA: 3'- uUGUCGCCuCC--------UCGCCUGuCCa-CUGG- -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 34156 | 0.7 | 0.291036 |
Target: 5'- cGGCGGCGGccccgAGGAGUGGccCGGGgccccGACCg -3' miRNA: 3'- -UUGUCGCC-----UCCUCGCCu-GUCCa----CUGG- -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 38205 | 0.7 | 0.291036 |
Target: 5'- gGGCGGCGGcGGGAaCGGACGGGgggaacgggGACg -3' miRNA: 3'- -UUGUCGCC-UCCUcGCCUGUCCa--------CUGg -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 45467 | 0.7 | 0.290311 |
Target: 5'- aGACGGCGGccGGGGUGGGCAugucggcgaagguGGUGgggGCCg -3' miRNA: 3'- -UUGUCGCCu-CCUCGCCUGU-------------CCAC---UGG- -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 12535 | 0.7 | 0.276106 |
Target: 5'- cAGCucGCGGAGcGGGCGcagcgcuGGCAGGUGGCa -3' miRNA: 3'- -UUGu-CGCCUC-CUCGC-------CUGUCCACUGg -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 33356 | 0.71 | 0.250012 |
Target: 5'- gAGCGGCGcgaGAGGGGUGGGgGcGGUGGCg -3' miRNA: 3'- -UUGUCGC---CUCCUCGCCUgU-CCACUGg -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 35765 | 0.71 | 0.237438 |
Target: 5'- -cCGGCGGGgcGGGGCGGugGguucGGUGGCUc -3' miRNA: 3'- uuGUCGCCU--CCUCGCCugU----CCACUGG- -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 1637 | 0.72 | 0.21388 |
Target: 5'- -cCGGgGGAGGguGGCaGGCAgGGUGACCg -3' miRNA: 3'- uuGUCgCCUCC--UCGcCUGU-CCACUGG- -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 6695 | 0.72 | 0.212197 |
Target: 5'- cACGGCGaGGGGuggcacgagcagccGGCGGGCAcGGUGugCa -3' miRNA: 3'- uUGUCGC-CUCC--------------UCGCCUGU-CCACugG- -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 2621 | 0.72 | 0.208313 |
Target: 5'- cGCAGCGcGAuGGAGCGGcGCGGacUGACCg -3' miRNA: 3'- uUGUCGC-CU-CCUCGCC-UGUCc-ACUGG- -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 28406 | 0.73 | 0.197553 |
Target: 5'- cGGCAGCGGcAGGcagGGCGGAUcGGUcGCCg -3' miRNA: 3'- -UUGUCGCC-UCC---UCGCCUGuCCAcUGG- -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 6549 | 0.73 | 0.192357 |
Target: 5'- gGGCGGUGGGGGAcGUGGcuacGCGGGcgGACCc -3' miRNA: 3'- -UUGUCGCCUCCU-CGCC----UGUCCa-CUGG- -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 47140 | 0.73 | 0.187281 |
Target: 5'- gAGCAGCGGAGcGAGgGGGCGcuGUGAgCg -3' miRNA: 3'- -UUGUCGCCUC-CUCgCCUGUc-CACUgG- -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 39769 | 0.74 | 0.163639 |
Target: 5'- cGACGGCgaGGAGGAGUGG-CGGGUGuggacgcuGCCc -3' miRNA: 3'- -UUGUCG--CCUCCUCGCCuGUCCAC--------UGG- -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 45554 | 0.74 | 0.159245 |
Target: 5'- cGACAGCGGccgaggucGGGGCGGGCcGGUugcGGCCg -3' miRNA: 3'- -UUGUCGCCu-------CCUCGCCUGuCCA---CUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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