Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26255 | 5' | -58.2 | NC_005345.2 | + | 26872 | 0.7 | 0.31345 |
Target: 5'- cGACAGCGGcGGuGCGGucgAUGGGUGAg- -3' miRNA: 3'- -UUGUCGCCuCCuCGCC---UGUCCACUgg -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 27573 | 0.7 | 0.31345 |
Target: 5'- -cCGGCGGccGGGCGccggauuaccGGCAGGUGAUCa -3' miRNA: 3'- uuGUCGCCucCUCGC----------CUGUCCACUGG- -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 28406 | 0.73 | 0.197553 |
Target: 5'- cGGCAGCGGcAGGcagGGCGGAUcGGUcGCCg -3' miRNA: 3'- -UUGUCGCC-UCC---UCGCCUGuCCAcUGG- -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 29527 | 0.66 | 0.484199 |
Target: 5'- cGGCAGUGcGAGGaAGUGaucaGGCAGGUGuucCCg -3' miRNA: 3'- -UUGUCGC-CUCC-UCGC----CUGUCCACu--GG- -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 31205 | 0.67 | 0.44441 |
Target: 5'- uGCGGCGGgugcgcacccGGGuGCGGcCGGGUGuACg -3' miRNA: 3'- uUGUCGCC----------UCCuCGCCuGUCCAC-UGg -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 31322 | 0.69 | 0.345331 |
Target: 5'- cGCGGUcuGGAGG-GCGGcCGGacGUGACCa -3' miRNA: 3'- uUGUCG--CCUCCuCGCCuGUC--CACUGG- -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 33356 | 0.71 | 0.250012 |
Target: 5'- gAGCGGCGcgaGAGGGGUGGGgGcGGUGGCg -3' miRNA: 3'- -UUGUCGC---CUCCUCGCCUgU-CCACUGg -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 34156 | 0.7 | 0.291036 |
Target: 5'- cGGCGGCGGccccgAGGAGUGGccCGGGgccccGACCg -3' miRNA: 3'- -UUGUCGCC-----UCCUCGCCu-GUCCa----CUGG- -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 35015 | 0.67 | 0.44441 |
Target: 5'- uGCGGCGGccacguGGGGGCGGgACcGGUGGu- -3' miRNA: 3'- uUGUCGCC------UCCUCGCC-UGuCCACUgg -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 35100 | 0.67 | 0.434751 |
Target: 5'- cGGCGGUGGuGcGGGCGuGGCGGGUGuuguUCa -3' miRNA: 3'- -UUGUCGCCuC-CUCGC-CUGUCCACu---GG- -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 35765 | 0.71 | 0.237438 |
Target: 5'- -cCGGCGGGgcGGGGCGGugGguucGGUGGCUc -3' miRNA: 3'- uuGUCGCCU--CCUCGCCugU----CCACUGG- -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 35835 | 0.67 | 0.464082 |
Target: 5'- --gGGC-GAGG-GCGcGGCGGGUGGCUc -3' miRNA: 3'- uugUCGcCUCCuCGC-CUGUCCACUGG- -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 36345 | 0.66 | 0.498526 |
Target: 5'- -cCGGCGGGccGAGCGGcucgggcgggucguuGCGGGUGGuCCa -3' miRNA: 3'- uuGUCGCCUc-CUCGCC---------------UGUCCACU-GG- -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 38205 | 0.7 | 0.291036 |
Target: 5'- gGGCGGCGGcGGGAaCGGACGGGgggaacgggGACg -3' miRNA: 3'- -UUGUCGCC-UCCUcGCCUGUCCa--------CUGg -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 38893 | 0.68 | 0.388355 |
Target: 5'- gGACGGCaGAGaucGGCGccCGGGUGACCg -3' miRNA: 3'- -UUGUCGcCUCc--UCGCcuGUCCACUGG- -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 39769 | 0.74 | 0.163639 |
Target: 5'- cGACGGCgaGGAGGAGUGG-CGGGUGuggacgcuGCCc -3' miRNA: 3'- -UUGUCG--CCUCCUCGCCuGUCCAC--------UGG- -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 45467 | 0.7 | 0.290311 |
Target: 5'- aGACGGCGGccGGGGUGGGCAugucggcgaagguGGUGgggGCCg -3' miRNA: 3'- -UUGUCGCCu-CCUCGCCUGU-------------CCAC---UGG- -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 45554 | 0.74 | 0.159245 |
Target: 5'- cGACAGCGGccgaggucGGGGCGGGCcGGUugcGGCCg -3' miRNA: 3'- -UUGUCGCCu-------CCUCGCCUGuCCA---CUGG- -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 47140 | 0.73 | 0.187281 |
Target: 5'- gAGCAGCGGAGcGAGgGGGCGcuGUGAgCg -3' miRNA: 3'- -UUGUCGCCUC-CUCgCCUGUc-CACUgG- -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 47651 | 1.08 | 0.000464 |
Target: 5'- gAACAGCGGAGGAGCGGACAGGUGACCc -3' miRNA: 3'- -UUGUCGCCUCCUCGCCUGUCCACUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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