miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26255 5' -58.2 NC_005345.2 + 1637 0.72 0.21388
Target:  5'- -cCGGgGGAGGguGGCaGGCAgGGUGACCg -3'
miRNA:   3'- uuGUCgCCUCC--UCGcCUGU-CCACUGG- -5'
26255 5' -58.2 NC_005345.2 + 2594 0.67 0.44441
Target:  5'- uGACGGCGaGGGAuaccucaugcgcGCGGACGGaGUcggGGCCg -3'
miRNA:   3'- -UUGUCGCcUCCU------------CGCCUGUC-CA---CUGG- -5'
26255 5' -58.2 NC_005345.2 + 2621 0.72 0.208313
Target:  5'- cGCAGCGcGAuGGAGCGGcGCGGacUGACCg -3'
miRNA:   3'- uUGUCGC-CU-CCUCGCC-UGUCc-ACUGG- -5'
26255 5' -58.2 NC_005345.2 + 2889 0.7 0.298365
Target:  5'- cGCGGCGGuGGccucgacgAGCGGAUcGGcgGACCg -3'
miRNA:   3'- uUGUCGCCuCC--------UCGCCUGuCCa-CUGG- -5'
26255 5' -58.2 NC_005345.2 + 3420 0.67 0.434751
Target:  5'- aGGCGGCGGGcgcGGcGGCGGGCGGcGaugcgGGCCc -3'
miRNA:   3'- -UUGUCGCCU---CC-UCGCCUGUC-Ca----CUGG- -5'
26255 5' -58.2 NC_005345.2 + 4493 0.69 0.345331
Target:  5'- gGACGGCacGGAGGAGCcGACcGG-GAUCg -3'
miRNA:   3'- -UUGUCG--CCUCCUCGcCUGuCCaCUGG- -5'
26255 5' -58.2 NC_005345.2 + 6549 0.73 0.192357
Target:  5'- gGGCGGUGGGGGAcGUGGcuacGCGGGcgGACCc -3'
miRNA:   3'- -UUGUCGCCUCCU-CGCC----UGUCCa-CUGG- -5'
26255 5' -58.2 NC_005345.2 + 6695 0.72 0.212197
Target:  5'- cACGGCGaGGGGuggcacgagcagccGGCGGGCAcGGUGugCa -3'
miRNA:   3'- uUGUCGC-CUCC--------------UCGCCUGU-CCACugG- -5'
26255 5' -58.2 NC_005345.2 + 6817 0.67 0.464082
Target:  5'- uGCGGCGGAcGccauGGCGGGCGGGaucGACa -3'
miRNA:   3'- uUGUCGCCUcC----UCGCCUGUCCa--CUGg -5'
26255 5' -58.2 NC_005345.2 + 7359 0.67 0.434751
Target:  5'- cGCGGUGGcGcAGcCGGGCggGGGUGGCCg -3'
miRNA:   3'- uUGUCGCCuCcUC-GCCUG--UCCACUGG- -5'
26255 5' -58.2 NC_005345.2 + 8683 0.66 0.493387
Target:  5'- cGCGGCGGuGGccgugacGUGGGCGGcccggcuGUGGCCg -3'
miRNA:   3'- uUGUCGCCuCCu------CGCCUGUC-------CACUGG- -5'
26255 5' -58.2 NC_005345.2 + 9649 0.66 0.525616
Target:  5'- cGACGGCGuGuGGGGCGGGC---UGACg -3'
miRNA:   3'- -UUGUCGC-CuCCUCGCCUGuccACUGg -5'
26255 5' -58.2 NC_005345.2 + 9889 0.69 0.362123
Target:  5'- cAGCAGCGGGccgaacucGGcGGCGaGCAGGaaUGACCg -3'
miRNA:   3'- -UUGUCGCCU--------CC-UCGCcUGUCC--ACUGG- -5'
26255 5' -58.2 NC_005345.2 + 12384 0.7 0.305083
Target:  5'- cGCAGCGGAGGGGaaGGCAGcggcgaggcgcgaGUcGGCCg -3'
miRNA:   3'- uUGUCGCCUCCUCgcCUGUC-------------CA-CUGG- -5'
26255 5' -58.2 NC_005345.2 + 12535 0.7 0.276106
Target:  5'- cAGCucGCGGAGcGGGCGcagcgcuGGCAGGUGGCa -3'
miRNA:   3'- -UUGu-CGCCUC-CUCGC-------CUGUCCACUGg -5'
26255 5' -58.2 NC_005345.2 + 14898 0.66 0.504724
Target:  5'- --aGGCGGAGcAGCGGGCGaagcgGGCCg -3'
miRNA:   3'- uugUCGCCUCcUCGCCUGUcca--CUGG- -5'
26255 5' -58.2 NC_005345.2 + 15547 0.68 0.370729
Target:  5'- cGCGGCGGAGaacacGGCGGcACcGGcGACCg -3'
miRNA:   3'- uUGUCGCCUCc----UCGCC-UGuCCaCUGG- -5'
26255 5' -58.2 NC_005345.2 + 21649 0.66 0.525616
Target:  5'- -uCAGCGGcucGGGCGGGguggGGGUGACUc -3'
miRNA:   3'- uuGUCGCCuc-CUCGCCUg---UCCACUGG- -5'
26255 5' -58.2 NC_005345.2 + 25634 0.7 0.305837
Target:  5'- -cCAGCGGaAGGcGCGGACGaacuucuGUGGCCu -3'
miRNA:   3'- uuGUCGCC-UCCuCGCCUGUc------CACUGG- -5'
26255 5' -58.2 NC_005345.2 + 26362 0.66 0.525616
Target:  5'- ---cGCcGAGGAucgcGCGGAUcccucccgAGGUGACCg -3'
miRNA:   3'- uuguCGcCUCCU----CGCCUG--------UCCACUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.