miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26255 5' -58.2 NC_005345.2 + 47651 1.08 0.000464
Target:  5'- gAACAGCGGAGGAGCGGACAGGUGACCc -3'
miRNA:   3'- -UUGUCGCCUCCUCGCCUGUCCACUGG- -5'
26255 5' -58.2 NC_005345.2 + 45554 0.74 0.159245
Target:  5'- cGACAGCGGccgaggucGGGGCGGGCcGGUugcGGCCg -3'
miRNA:   3'- -UUGUCGCCu-------CCUCGCCUGuCCA---CUGG- -5'
26255 5' -58.2 NC_005345.2 + 39769 0.74 0.163639
Target:  5'- cGACGGCgaGGAGGAGUGG-CGGGUGuggacgcuGCCc -3'
miRNA:   3'- -UUGUCG--CCUCCUCGCCuGUCCAC--------UGG- -5'
26255 5' -58.2 NC_005345.2 + 47140 0.73 0.187281
Target:  5'- gAGCAGCGGAGcGAGgGGGCGcuGUGAgCg -3'
miRNA:   3'- -UUGUCGCCUC-CUCgCCUGUc-CACUgG- -5'
26255 5' -58.2 NC_005345.2 + 6549 0.73 0.192357
Target:  5'- gGGCGGUGGGGGAcGUGGcuacGCGGGcgGACCc -3'
miRNA:   3'- -UUGUCGCCUCCU-CGCC----UGUCCa-CUGG- -5'
26255 5' -58.2 NC_005345.2 + 28406 0.73 0.197553
Target:  5'- cGGCAGCGGcAGGcagGGCGGAUcGGUcGCCg -3'
miRNA:   3'- -UUGUCGCC-UCC---UCGCCUGuCCAcUGG- -5'
26255 5' -58.2 NC_005345.2 + 2621 0.72 0.208313
Target:  5'- cGCAGCGcGAuGGAGCGGcGCGGacUGACCg -3'
miRNA:   3'- uUGUCGC-CU-CCUCGCC-UGUCc-ACUGG- -5'
26255 5' -58.2 NC_005345.2 + 6695 0.72 0.212197
Target:  5'- cACGGCGaGGGGuggcacgagcagccGGCGGGCAcGGUGugCa -3'
miRNA:   3'- uUGUCGC-CUCC--------------UCGCCUGU-CCACugG- -5'
26255 5' -58.2 NC_005345.2 + 1637 0.72 0.21388
Target:  5'- -cCGGgGGAGGguGGCaGGCAgGGUGACCg -3'
miRNA:   3'- uuGUCgCCUCC--UCGcCUGU-CCACUGG- -5'
26255 5' -58.2 NC_005345.2 + 35765 0.71 0.237438
Target:  5'- -cCGGCGGGgcGGGGCGGugGguucGGUGGCUc -3'
miRNA:   3'- uuGUCGCCU--CCUCGCCugU----CCACUGG- -5'
26255 5' -58.2 NC_005345.2 + 33356 0.71 0.250012
Target:  5'- gAGCGGCGcgaGAGGGGUGGGgGcGGUGGCg -3'
miRNA:   3'- -UUGUCGC---CUCCUCGCCUgU-CCACUGg -5'
26255 5' -58.2 NC_005345.2 + 12535 0.7 0.276106
Target:  5'- cAGCucGCGGAGcGGGCGcagcgcuGGCAGGUGGCa -3'
miRNA:   3'- -UUGu-CGCCUC-CUCGC-------CUGUCCACUGg -5'
26255 5' -58.2 NC_005345.2 + 45467 0.7 0.290311
Target:  5'- aGACGGCGGccGGGGUGGGCAugucggcgaagguGGUGgggGCCg -3'
miRNA:   3'- -UUGUCGCCu-CCUCGCCUGU-------------CCAC---UGG- -5'
26255 5' -58.2 NC_005345.2 + 38205 0.7 0.291036
Target:  5'- gGGCGGCGGcGGGAaCGGACGGGgggaacgggGACg -3'
miRNA:   3'- -UUGUCGCC-UCCUcGCCUGUCCa--------CUGg -5'
26255 5' -58.2 NC_005345.2 + 34156 0.7 0.291036
Target:  5'- cGGCGGCGGccccgAGGAGUGGccCGGGgccccGACCg -3'
miRNA:   3'- -UUGUCGCC-----UCCUCGCCu-GUCCa----CUGG- -5'
26255 5' -58.2 NC_005345.2 + 2889 0.7 0.298365
Target:  5'- cGCGGCGGuGGccucgacgAGCGGAUcGGcgGACCg -3'
miRNA:   3'- uUGUCGCCuCC--------UCGCCUGuCCa-CUGG- -5'
26255 5' -58.2 NC_005345.2 + 12384 0.7 0.305083
Target:  5'- cGCAGCGGAGGGGaaGGCAGcggcgaggcgcgaGUcGGCCg -3'
miRNA:   3'- uUGUCGCCUCCUCgcCUGUC-------------CA-CUGG- -5'
26255 5' -58.2 NC_005345.2 + 25634 0.7 0.305837
Target:  5'- -cCAGCGGaAGGcGCGGACGaacuucuGUGGCCu -3'
miRNA:   3'- uuGUCGCC-UCCuCGCCUGUc------CACUGG- -5'
26255 5' -58.2 NC_005345.2 + 26872 0.7 0.31345
Target:  5'- cGACAGCGGcGGuGCGGucgAUGGGUGAg- -3'
miRNA:   3'- -UUGUCGCCuCCuCGCC---UGUCCACUgg -5'
26255 5' -58.2 NC_005345.2 + 27573 0.7 0.31345
Target:  5'- -cCGGCGGccGGGCGccggauuaccGGCAGGUGAUCa -3'
miRNA:   3'- uuGUCGCCucCUCGC----------CUGUCCACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.