Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26255 | 5' | -58.2 | NC_005345.2 | + | 28406 | 0.73 | 0.197553 |
Target: 5'- cGGCAGCGGcAGGcagGGCGGAUcGGUcGCCg -3' miRNA: 3'- -UUGUCGCC-UCC---UCGCCUGuCCAcUGG- -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 29527 | 0.66 | 0.484199 |
Target: 5'- cGGCAGUGcGAGGaAGUGaucaGGCAGGUGuucCCg -3' miRNA: 3'- -UUGUCGC-CUCC-UCGC----CUGUCCACu--GG- -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 14898 | 0.66 | 0.504724 |
Target: 5'- --aGGCGGAGcAGCGGGCGaagcgGGCCg -3' miRNA: 3'- uugUCGCCUCcUCGCCUGUcca--CUGG- -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 9649 | 0.66 | 0.525616 |
Target: 5'- cGACGGCGuGuGGGGCGGGC---UGACg -3' miRNA: 3'- -UUGUCGC-CuCCUCGCCUGuccACUGg -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 12535 | 0.7 | 0.276106 |
Target: 5'- cAGCucGCGGAGcGGGCGcagcgcuGGCAGGUGGCa -3' miRNA: 3'- -UUGu-CGCCUC-CUCGC-------CUGUCCACUGg -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 12384 | 0.7 | 0.305083 |
Target: 5'- cGCAGCGGAGGGGaaGGCAGcggcgaggcgcgaGUcGGCCg -3' miRNA: 3'- uUGUCGCCUCCUCgcCUGUC-------------CA-CUGG- -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 27573 | 0.7 | 0.31345 |
Target: 5'- -cCGGCGGccGGGCGccggauuaccGGCAGGUGAUCa -3' miRNA: 3'- uuGUCGCCucCUCGC----------CUGUCCACUGG- -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 26872 | 0.7 | 0.31345 |
Target: 5'- cGACAGCGGcGGuGCGGucgAUGGGUGAg- -3' miRNA: 3'- -UUGUCGCCuCCuCGCC---UGUCCACUgg -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 39769 | 0.74 | 0.163639 |
Target: 5'- cGACGGCgaGGAGGAGUGG-CGGGUGuggacgcuGCCc -3' miRNA: 3'- -UUGUCG--CCUCCUCGCCuGUCCAC--------UGG- -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 6817 | 0.67 | 0.464082 |
Target: 5'- uGCGGCGGAcGccauGGCGGGCGGGaucGACa -3' miRNA: 3'- uUGUCGCCUcC----UCGCCUGUCCa--CUGg -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 9889 | 0.69 | 0.362123 |
Target: 5'- cAGCAGCGGGccgaacucGGcGGCGaGCAGGaaUGACCg -3' miRNA: 3'- -UUGUCGCCU--------CC-UCGCcUGUCC--ACUGG- -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 31322 | 0.69 | 0.345331 |
Target: 5'- cGCGGUcuGGAGG-GCGGcCGGacGUGACCa -3' miRNA: 3'- uUGUCG--CCUCCuCGCCuGUC--CACUGG- -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 2621 | 0.72 | 0.208313 |
Target: 5'- cGCAGCGcGAuGGAGCGGcGCGGacUGACCg -3' miRNA: 3'- uUGUCGC-CU-CCUCGCC-UGUCc-ACUGG- -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 38893 | 0.68 | 0.388355 |
Target: 5'- gGACGGCaGAGaucGGCGccCGGGUGACCg -3' miRNA: 3'- -UUGUCGcCUCc--UCGCcuGUCCACUGG- -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 6695 | 0.72 | 0.212197 |
Target: 5'- cACGGCGaGGGGuggcacgagcagccGGCGGGCAcGGUGugCa -3' miRNA: 3'- uUGUCGC-CUCC--------------UCGCCUGU-CCACugG- -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 4493 | 0.69 | 0.345331 |
Target: 5'- gGACGGCacGGAGGAGCcGACcGG-GAUCg -3' miRNA: 3'- -UUGUCG--CCUCCUCGcCUGuCCaCUGG- -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 7359 | 0.67 | 0.434751 |
Target: 5'- cGCGGUGGcGcAGcCGGGCggGGGUGGCCg -3' miRNA: 3'- uUGUCGCCuCcUC-GCCUG--UCCACUGG- -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 8683 | 0.66 | 0.493387 |
Target: 5'- cGCGGCGGuGGccgugacGUGGGCGGcccggcuGUGGCCg -3' miRNA: 3'- uUGUCGCCuCCu------CGCCUGUC-------CACUGG- -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 1637 | 0.72 | 0.21388 |
Target: 5'- -cCGGgGGAGGguGGCaGGCAgGGUGACCg -3' miRNA: 3'- uuGUCgCCUCC--UCGcCUGU-CCACUGG- -5' |
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26255 | 5' | -58.2 | NC_005345.2 | + | 25634 | 0.7 | 0.305837 |
Target: 5'- -cCAGCGGaAGGcGCGGACGaacuucuGUGGCCu -3' miRNA: 3'- uuGUCGCC-UCCuCGCCUGUc------CACUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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