miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26255 5' -58.2 NC_005345.2 + 26362 0.66 0.525616
Target:  5'- ---cGCcGAGGAucgcGCGGAUcccucccgAGGUGACCg -3'
miRNA:   3'- uuguCGcCUCCU----CGCCUG--------UCCACUGG- -5'
26255 5' -58.2 NC_005345.2 + 38205 0.7 0.291036
Target:  5'- gGGCGGCGGcGGGAaCGGACGGGgggaacgggGACg -3'
miRNA:   3'- -UUGUCGCC-UCCUcGCCUGUCCa--------CUGg -5'
26255 5' -58.2 NC_005345.2 + 34156 0.7 0.291036
Target:  5'- cGGCGGCGGccccgAGGAGUGGccCGGGgccccGACCg -3'
miRNA:   3'- -UUGUCGCC-----UCCUCGCCu-GUCCa----CUGG- -5'
26255 5' -58.2 NC_005345.2 + 45467 0.7 0.290311
Target:  5'- aGACGGCGGccGGGGUGGGCAugucggcgaagguGGUGgggGCCg -3'
miRNA:   3'- -UUGUCGCCu-CCUCGCCUGU-------------CCAC---UGG- -5'
26255 5' -58.2 NC_005345.2 + 33356 0.71 0.250012
Target:  5'- gAGCGGCGcgaGAGGGGUGGGgGcGGUGGCg -3'
miRNA:   3'- -UUGUCGC---CUCCUCGCCUgU-CCACUGg -5'
26255 5' -58.2 NC_005345.2 + 35765 0.71 0.237438
Target:  5'- -cCGGCGGGgcGGGGCGGugGguucGGUGGCUc -3'
miRNA:   3'- uuGUCGCCU--CCUCGCCugU----CCACUGG- -5'
26255 5' -58.2 NC_005345.2 + 6549 0.73 0.192357
Target:  5'- gGGCGGUGGGGGAcGUGGcuacGCGGGcgGACCc -3'
miRNA:   3'- -UUGUCGCCUCCU-CGCC----UGUCCa-CUGG- -5'
26255 5' -58.2 NC_005345.2 + 45554 0.74 0.159245
Target:  5'- cGACAGCGGccgaggucGGGGCGGGCcGGUugcGGCCg -3'
miRNA:   3'- -UUGUCGCCu-------CCUCGCCUGuCCA---CUGG- -5'
26255 5' -58.2 NC_005345.2 + 47651 1.08 0.000464
Target:  5'- gAACAGCGGAGGAGCGGACAGGUGACCc -3'
miRNA:   3'- -UUGUCGCCUCCUCGCCUGUCCACUGG- -5'
26255 5' -58.2 NC_005345.2 + 2889 0.7 0.298365
Target:  5'- cGCGGCGGuGGccucgacgAGCGGAUcGGcgGACCg -3'
miRNA:   3'- uUGUCGCCuCC--------UCGCCUGuCCa-CUGG- -5'
26255 5' -58.2 NC_005345.2 + 15547 0.68 0.370729
Target:  5'- cGCGGCGGAGaacacGGCGGcACcGGcGACCg -3'
miRNA:   3'- uUGUCGCCUCc----UCGCC-UGuCCaCUGG- -5'
26255 5' -58.2 NC_005345.2 + 36345 0.66 0.498526
Target:  5'- -cCGGCGGGccGAGCGGcucgggcgggucguuGCGGGUGGuCCa -3'
miRNA:   3'- uuGUCGCCUc-CUCGCC---------------UGUCCACU-GG- -5'
26255 5' -58.2 NC_005345.2 + 35835 0.67 0.464082
Target:  5'- --gGGC-GAGG-GCGcGGCGGGUGGCUc -3'
miRNA:   3'- uugUCGcCUCCuCGC-CUGUCCACUGG- -5'
26255 5' -58.2 NC_005345.2 + 31205 0.67 0.44441
Target:  5'- uGCGGCGGgugcgcacccGGGuGCGGcCGGGUGuACg -3'
miRNA:   3'- uUGUCGCC----------UCCuCGCCuGUCCAC-UGg -5'
26255 5' -58.2 NC_005345.2 + 2594 0.67 0.44441
Target:  5'- uGACGGCGaGGGAuaccucaugcgcGCGGACGGaGUcggGGCCg -3'
miRNA:   3'- -UUGUCGCcUCCU------------CGCCUGUC-CA---CUGG- -5'
26255 5' -58.2 NC_005345.2 + 35015 0.67 0.44441
Target:  5'- uGCGGCGGccacguGGGGGCGGgACcGGUGGu- -3'
miRNA:   3'- uUGUCGCC------UCCUCGCC-UGuCCACUgg -5'
26255 5' -58.2 NC_005345.2 + 35100 0.67 0.434751
Target:  5'- cGGCGGUGGuGcGGGCGuGGCGGGUGuuguUCa -3'
miRNA:   3'- -UUGUCGCCuC-CUCGC-CUGUCCACu---GG- -5'
26255 5' -58.2 NC_005345.2 + 3420 0.67 0.434751
Target:  5'- aGGCGGCGGGcgcGGcGGCGGGCGGcGaugcgGGCCc -3'
miRNA:   3'- -UUGUCGCCU---CC-UCGCCUGUC-Ca----CUGG- -5'
26255 5' -58.2 NC_005345.2 + 48894 0.68 0.379473
Target:  5'- uGGCGGC-GAGGuGCGGGCGGcGaUGGCUc -3'
miRNA:   3'- -UUGUCGcCUCCuCGCCUGUC-C-ACUGG- -5'
26255 5' -58.2 NC_005345.2 + 9649 0.66 0.525616
Target:  5'- cGACGGCGuGuGGGGCGGGC---UGACg -3'
miRNA:   3'- -UUGUCGC-CuCCUCGCCUGuccACUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.