miRNA display CGI


Results 41 - 60 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26256 3' -55.7 NC_005345.2 + 21452 0.66 0.662827
Target:  5'- gCAGggcuGCCGugucggcGCGCCCGgucacGCGGCCGg- -3'
miRNA:   3'- -GUCau--CGGC-------UGCGGGCa----UGUUGGCag -5'
26256 3' -55.7 NC_005345.2 + 21575 0.67 0.597714
Target:  5'- cCGGUAauCCGGCGCCCG-GCcGCCGg- -3'
miRNA:   3'- -GUCAUc-GGCUGCGGGCaUGuUGGCag -5'
26256 3' -55.7 NC_005345.2 + 22624 0.66 0.674919
Target:  5'- gCGGUGGuuCCGGCGCUCGUGCcggguGCaagggGUCg -3'
miRNA:   3'- -GUCAUC--GGCUGCGGGCAUGu----UGg----CAG- -5'
26256 3' -55.7 NC_005345.2 + 24646 0.75 0.209386
Target:  5'- gCGGUGGUCGACcaggaucccgcggGCCCGggacCGGCCGUCg -3'
miRNA:   3'- -GUCAUCGGCUG-------------CGGGCau--GUUGGCAG- -5'
26256 3' -55.7 NC_005345.2 + 25242 0.68 0.508185
Target:  5'- aCGGcucGUCGGCGCUCGUGCGGcaccugcucaacucCCGUCg -3'
miRNA:   3'- -GUCau-CGGCUGCGGGCAUGUU--------------GGCAG- -5'
26256 3' -55.7 NC_005345.2 + 26690 0.66 0.652907
Target:  5'- gCGGUaaaGGCCGACGCC---GCGACCa-- -3'
miRNA:   3'- -GUCA---UCGGCUGCGGgcaUGUUGGcag -5'
26256 3' -55.7 NC_005345.2 + 26791 0.72 0.34098
Target:  5'- -cGUGGCCGGCGCCgCGUcGCAggcGCUGcUCg -3'
miRNA:   3'- guCAUCGGCUGCGG-GCA-UGU---UGGC-AG- -5'
26256 3' -55.7 NC_005345.2 + 28110 0.68 0.515546
Target:  5'- gCGGUcGCCGGCGCgCGUGCcgaggaacgcacccgGGCCGg- -3'
miRNA:   3'- -GUCAuCGGCUGCGgGCAUG---------------UUGGCag -5'
26256 3' -55.7 NC_005345.2 + 30633 0.66 0.663928
Target:  5'- cCGGacGCCGACGCCgCGUACucgcucGACC-UCg -3'
miRNA:   3'- -GUCauCGGCUGCGG-GCAUG------UUGGcAG- -5'
26256 3' -55.7 NC_005345.2 + 31308 0.68 0.511334
Target:  5'- -uGUcGCCGGgGCCCG-GCGGCCGg- -3'
miRNA:   3'- guCAuCGGCUgCGGGCaUGUUGGCag -5'
26256 3' -55.7 NC_005345.2 + 31933 0.66 0.630817
Target:  5'- aCAGUgauGGCCGGCGacaCCG-ACAACCc-- -3'
miRNA:   3'- -GUCA---UCGGCUGCg--GGCaUGUUGGcag -5'
26256 3' -55.7 NC_005345.2 + 33831 0.73 0.294062
Target:  5'- ---cGGCCGACGCaCCGaccUACAGCCGg- -3'
miRNA:   3'- gucaUCGGCUGCG-GGC---AUGUUGGCag -5'
26256 3' -55.7 NC_005345.2 + 34095 0.69 0.470067
Target:  5'- ---aGGCCGGCGCCCGcgACGgcgacaucGCCGcCg -3'
miRNA:   3'- gucaUCGGCUGCGGGCa-UGU--------UGGCaG- -5'
26256 3' -55.7 NC_005345.2 + 34220 0.72 0.332798
Target:  5'- ----cGCCGcCGCCCGcUGCAGCCGcCg -3'
miRNA:   3'- gucauCGGCuGCGGGC-AUGUUGGCaG- -5'
26256 3' -55.7 NC_005345.2 + 34579 0.68 0.521889
Target:  5'- gUAGU-GCCGACacggccggGCCCGUGCcguACCGg- -3'
miRNA:   3'- -GUCAuCGGCUG--------CGGGCAUGu--UGGCag -5'
26256 3' -55.7 NC_005345.2 + 34745 0.7 0.430565
Target:  5'- gCAGgcGUCGGCGa-CGUGCAGCCGg- -3'
miRNA:   3'- -GUCauCGGCUGCggGCAUGUUGGCag -5'
26256 3' -55.7 NC_005345.2 + 36789 0.68 0.543243
Target:  5'- gAGgcGUCgGGC-CCCGUGCAGCCGa- -3'
miRNA:   3'- gUCauCGG-CUGcGGGCAUGUUGGCag -5'
26256 3' -55.7 NC_005345.2 + 37297 0.66 0.663928
Target:  5'- gCAG-GGCCGAUGCCC--AC-GCCGUg -3'
miRNA:   3'- -GUCaUCGGCUGCGGGcaUGuUGGCAg -5'
26256 3' -55.7 NC_005345.2 + 37433 0.66 0.68587
Target:  5'- uGGUAcGCggCGGCgGCCCGcugguCGGCCGUCg -3'
miRNA:   3'- gUCAU-CG--GCUG-CGGGCau---GUUGGCAG- -5'
26256 3' -55.7 NC_005345.2 + 37493 0.66 0.630817
Target:  5'- aAGuUGGCCGcuacCGCcgCCGUGCAGgCGUCu -3'
miRNA:   3'- gUC-AUCGGCu---GCG--GGCAUGUUgGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.