miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26256 3' -55.7 NC_005345.2 + 10572 0.66 0.630817
Target:  5'- ---cGGCCGcgaGCGCCaCGUAC-GCCGUg -3'
miRNA:   3'- gucaUCGGC---UGCGG-GCAUGuUGGCAg -5'
26256 3' -55.7 NC_005345.2 + 10753 0.66 0.630817
Target:  5'- -cGUcGCCGACgccgaGCCCcUGcCGGCCGUCg -3'
miRNA:   3'- guCAuCGGCUG-----CGGGcAU-GUUGGCAG- -5'
26256 3' -55.7 NC_005345.2 + 11020 0.67 0.597714
Target:  5'- aAGUAGgUGACGacCCCGgccGCAGCCGg- -3'
miRNA:   3'- gUCAUCgGCUGC--GGGCa--UGUUGGCag -5'
26256 3' -55.7 NC_005345.2 + 11416 0.68 0.521889
Target:  5'- uCGGUGGUCGACgacagcagguuGCCCGgaaucgGCAcGCUGUCu -3'
miRNA:   3'- -GUCAUCGGCUG-----------CGGGCa-----UGU-UGGCAG- -5'
26256 3' -55.7 NC_005345.2 + 11564 0.67 0.597714
Target:  5'- ---gAGCCGGuCGCCCGccUGCAGCCc-- -3'
miRNA:   3'- gucaUCGGCU-GCGGGC--AUGUUGGcag -5'
26256 3' -55.7 NC_005345.2 + 12708 0.71 0.39308
Target:  5'- uGGUGGgCGAUgcaGCCCGUGuucGCCGUCg -3'
miRNA:   3'- gUCAUCgGCUG---CGGGCAUgu-UGGCAG- -5'
26256 3' -55.7 NC_005345.2 + 13403 0.67 0.586727
Target:  5'- cCGGgauGCCGcCGCUCGUuCGGCCGcCg -3'
miRNA:   3'- -GUCau-CGGCuGCGGGCAuGUUGGCaG- -5'
26256 3' -55.7 NC_005345.2 + 13467 0.66 0.652907
Target:  5'- aCGGcguGCUGugGCCCG-ACGGCaccgCGUCg -3'
miRNA:   3'- -GUCau-CGGCugCGGGCaUGUUG----GCAG- -5'
26256 3' -55.7 NC_005345.2 + 13501 0.68 0.532527
Target:  5'- gCGGUGGCgCGGCGagcaCCCGU-CGAUCGUg -3'
miRNA:   3'- -GUCAUCG-GCUGC----GGGCAuGUUGGCAg -5'
26256 3' -55.7 NC_005345.2 + 13747 0.66 0.630817
Target:  5'- gCGGU-GCCGAcCGCCCGcAUc-CCGUCc -3'
miRNA:   3'- -GUCAuCGGCU-GCGGGCaUGuuGGCAG- -5'
26256 3' -55.7 NC_005345.2 + 13839 0.67 0.619769
Target:  5'- cCGGaAGCuCGGCGCgaGgACGGCCGUCc -3'
miRNA:   3'- -GUCaUCG-GCUGCGggCaUGUUGGCAG- -5'
26256 3' -55.7 NC_005345.2 + 13947 0.68 0.532527
Target:  5'- ---cAGCCagauaGCGCCCGcUGCGAuCCGUCg -3'
miRNA:   3'- gucaUCGGc----UGCGGGC-AUGUU-GGCAG- -5'
26256 3' -55.7 NC_005345.2 + 14413 0.69 0.48023
Target:  5'- -cGUcGCCGACGCCUGccggGCGAUCGa- -3'
miRNA:   3'- guCAuCGGCUGCGGGCa---UGUUGGCag -5'
26256 3' -55.7 NC_005345.2 + 14679 0.7 0.420997
Target:  5'- -cGUcGCCGAUGCCgGgcCGGCCGUg -3'
miRNA:   3'- guCAuCGGCUGCGGgCauGUUGGCAg -5'
26256 3' -55.7 NC_005345.2 + 14829 0.75 0.204416
Target:  5'- -uGUGGUCGACGCCCGaGCAgcuuGCCGg- -3'
miRNA:   3'- guCAUCGGCUGCGGGCaUGU----UGGCag -5'
26256 3' -55.7 NC_005345.2 + 16598 0.67 0.576871
Target:  5'- gCGGUGG-CGugGCCCGacccccucggcgucgGCAugcacGCCGUCa -3'
miRNA:   3'- -GUCAUCgGCugCGGGCa--------------UGU-----UGGCAG- -5'
26256 3' -55.7 NC_005345.2 + 19161 0.71 0.366393
Target:  5'- -cGUcGCCGG-GCCCGUACGGcugcCCGUCg -3'
miRNA:   3'- guCAuCGGCUgCGGGCAUGUU----GGCAG- -5'
26256 3' -55.7 NC_005345.2 + 19326 0.68 0.529327
Target:  5'- aAGUGGCCGAUcugcggGCCCgGUugGAcucccucgggauccCCGUCg -3'
miRNA:   3'- gUCAUCGGCUG------CGGG-CAugUU--------------GGCAG- -5'
26256 3' -55.7 NC_005345.2 + 20466 0.68 0.511334
Target:  5'- gAGUAGCCaacgccuCGCCUGUGgcccCGACCGUg -3'
miRNA:   3'- gUCAUCGGcu-----GCGGGCAU----GUUGGCAg -5'
26256 3' -55.7 NC_005345.2 + 21258 0.67 0.608731
Target:  5'- --cUGGUCGuCGUCCGUGuCGucGCCGUCg -3'
miRNA:   3'- gucAUCGGCuGCGGGCAU-GU--UGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.