miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26256 3' -55.7 NC_005345.2 + 8146 0.69 0.48023
Target:  5'- --uUGGCCGcuGCGCCCGUGggaggcaGACCGUg -3'
miRNA:   3'- gucAUCGGC--UGCGGGCAUg------UUGGCAg -5'
26256 3' -55.7 NC_005345.2 + 7077 0.69 0.490499
Target:  5'- -cGUAGCuCGACGCugucgCCGaGCAGCCGg- -3'
miRNA:   3'- guCAUCG-GCUGCG-----GGCaUGUUGGCag -5'
26256 3' -55.7 NC_005345.2 + 6076 0.69 0.490499
Target:  5'- gAGUGGCUGcUGCCCGacgacACGACCGa- -3'
miRNA:   3'- gUCAUCGGCuGCGGGCa----UGUUGGCag -5'
26256 3' -55.7 NC_005345.2 + 40695 0.69 0.500869
Target:  5'- aCGGgAGUCGcgaccGCGCCCGUGCucgUCGUCg -3'
miRNA:   3'- -GUCaUCGGC-----UGCGGGCAUGuu-GGCAG- -5'
26256 3' -55.7 NC_005345.2 + 25242 0.68 0.508185
Target:  5'- aCGGcucGUCGGCGCUCGUGCGGcaccugcucaacucCCGUCg -3'
miRNA:   3'- -GUCau-CGGCUGCGGGCAUGUU--------------GGCAG- -5'
26256 3' -55.7 NC_005345.2 + 20466 0.68 0.511334
Target:  5'- gAGUAGCCaacgccuCGCCUGUGgcccCGACCGUg -3'
miRNA:   3'- gUCAUCGGcu-----GCGGGCAU----GUUGGCAg -5'
26256 3' -55.7 NC_005345.2 + 31308 0.68 0.511334
Target:  5'- -uGUcGCCGGgGCCCG-GCGGCCGg- -3'
miRNA:   3'- guCAuCGGCUgCGGGCaUGUUGGCag -5'
26256 3' -55.7 NC_005345.2 + 28110 0.68 0.515546
Target:  5'- gCGGUcGCCGGCGCgCGUGCcgaggaacgcacccgGGCCGg- -3'
miRNA:   3'- -GUCAuCGGCUGCGgGCAUG---------------UUGGCag -5'
26256 3' -55.7 NC_005345.2 + 11416 0.68 0.521889
Target:  5'- uCGGUGGUCGACgacagcagguuGCCCGgaaucgGCAcGCUGUCu -3'
miRNA:   3'- -GUCAUCGGCUG-----------CGGGCa-----UGU-UGGCAG- -5'
26256 3' -55.7 NC_005345.2 + 34579 0.68 0.521889
Target:  5'- gUAGU-GCCGACacggccggGCCCGUGCcguACCGg- -3'
miRNA:   3'- -GUCAuCGGCUG--------CGGGCAUGu--UGGCag -5'
26256 3' -55.7 NC_005345.2 + 3261 0.68 0.521889
Target:  5'- uCGGU-GCCGAgGuacCCCGUGCGcagcugcguGCCGUCc -3'
miRNA:   3'- -GUCAuCGGCUgC---GGGCAUGU---------UGGCAG- -5'
26256 3' -55.7 NC_005345.2 + 19326 0.68 0.529327
Target:  5'- aAGUGGCCGAUcugcggGCCCgGUugGAcucccucgggauccCCGUCg -3'
miRNA:   3'- gUCAUCGGCUG------CGGG-CAugUU--------------GGCAG- -5'
26256 3' -55.7 NC_005345.2 + 38773 0.68 0.532527
Target:  5'- -cGUGGggcaCCGACGCCCucgaaggcucGUACucgauGACCGUCa -3'
miRNA:   3'- guCAUC----GGCUGCGGG----------CAUG-----UUGGCAG- -5'
26256 3' -55.7 NC_005345.2 + 5433 0.68 0.532527
Target:  5'- gAGUucuucGgCGGCGCCCGgguCGGCCGUa -3'
miRNA:   3'- gUCAu----CgGCUGCGGGCau-GUUGGCAg -5'
26256 3' -55.7 NC_005345.2 + 13501 0.68 0.532527
Target:  5'- gCGGUGGCgCGGCGagcaCCCGU-CGAUCGUg -3'
miRNA:   3'- -GUCAUCG-GCUGC----GGGCAuGUUGGCAg -5'
26256 3' -55.7 NC_005345.2 + 45102 0.68 0.532527
Target:  5'- -cGU-GUCGGCGCUCGUcgGC-GCCGUCg -3'
miRNA:   3'- guCAuCGGCUGCGGGCA--UGuUGGCAG- -5'
26256 3' -55.7 NC_005345.2 + 13947 0.68 0.532527
Target:  5'- ---cAGCCagauaGCGCCCGcUGCGAuCCGUCg -3'
miRNA:   3'- gucaUCGGc----UGCGGGC-AUGUU-GGCAG- -5'
26256 3' -55.7 NC_005345.2 + 36789 0.68 0.543243
Target:  5'- gAGgcGUCgGGC-CCCGUGCAGCCGa- -3'
miRNA:   3'- gUCauCGG-CUGcGGGCAUGUUGGCag -5'
26256 3' -55.7 NC_005345.2 + 4646 0.68 0.543243
Target:  5'- ---gGGCCGuCGCCUgcuGUGCcucGGCCGUCg -3'
miRNA:   3'- gucaUCGGCuGCGGG---CAUG---UUGGCAG- -5'
26256 3' -55.7 NC_005345.2 + 1359 0.68 0.554028
Target:  5'- aAGUgGGuuGAUGuCCgCGUACAGCgGUCg -3'
miRNA:   3'- gUCA-UCggCUGC-GG-GCAUGUUGgCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.