Results 21 - 40 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26256 | 3' | -55.7 | NC_005345.2 | + | 10753 | 0.66 | 0.630817 |
Target: 5'- -cGUcGCCGACgccgaGCCCcUGcCGGCCGUCg -3' miRNA: 3'- guCAuCGGCUG-----CGGGcAU-GUUGGCAG- -5' |
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26256 | 3' | -55.7 | NC_005345.2 | + | 31933 | 0.66 | 0.630817 |
Target: 5'- aCAGUgauGGCCGGCGacaCCG-ACAACCc-- -3' miRNA: 3'- -GUCA---UCGGCUGCg--GGCaUGUUGGcag -5' |
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26256 | 3' | -55.7 | NC_005345.2 | + | 13747 | 0.66 | 0.630817 |
Target: 5'- gCGGU-GCCGAcCGCCCGcAUc-CCGUCc -3' miRNA: 3'- -GUCAuCGGCU-GCGGGCaUGuuGGCAG- -5' |
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26256 | 3' | -55.7 | NC_005345.2 | + | 8715 | 0.67 | 0.619769 |
Target: 5'- -uGUGGCCGAcuCGUCCGUcgccggcgGCGAuCCGUa -3' miRNA: 3'- guCAUCGGCU--GCGGGCA--------UGUU-GGCAg -5' |
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26256 | 3' | -55.7 | NC_005345.2 | + | 13839 | 0.67 | 0.619769 |
Target: 5'- cCGGaAGCuCGGCGCgaGgACGGCCGUCc -3' miRNA: 3'- -GUCaUCG-GCUGCGggCaUGUUGGCAG- -5' |
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26256 | 3' | -55.7 | NC_005345.2 | + | 42148 | 0.67 | 0.608731 |
Target: 5'- aCGGUGGCgacgcugccuguCGGCGCCCGgcCAGCagCGUg -3' miRNA: 3'- -GUCAUCG------------GCUGCGGGCauGUUG--GCAg -5' |
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26256 | 3' | -55.7 | NC_005345.2 | + | 21258 | 0.67 | 0.608731 |
Target: 5'- --cUGGUCGuCGUCCGUGuCGucGCCGUCg -3' miRNA: 3'- gucAUCGGCuGCGGGCAU-GU--UGGCAG- -5' |
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26256 | 3' | -55.7 | NC_005345.2 | + | 21575 | 0.67 | 0.597714 |
Target: 5'- cCGGUAauCCGGCGCCCG-GCcGCCGg- -3' miRNA: 3'- -GUCAUc-GGCUGCGGGCaUGuUGGCag -5' |
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26256 | 3' | -55.7 | NC_005345.2 | + | 11020 | 0.67 | 0.597714 |
Target: 5'- aAGUAGgUGACGacCCCGgccGCAGCCGg- -3' miRNA: 3'- gUCAUCgGCUGC--GGGCa--UGUUGGCag -5' |
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26256 | 3' | -55.7 | NC_005345.2 | + | 11564 | 0.67 | 0.597714 |
Target: 5'- ---gAGCCGGuCGCCCGccUGCAGCCc-- -3' miRNA: 3'- gucaUCGGCU-GCGGGC--AUGUUGGcag -5' |
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26256 | 3' | -55.7 | NC_005345.2 | + | 39787 | 0.67 | 0.596614 |
Target: 5'- gUAGUGGUCGAgcccggcCGCCCGcagccacCAugCGUCg -3' miRNA: 3'- -GUCAUCGGCU-------GCGGGCau-----GUugGCAG- -5' |
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26256 | 3' | -55.7 | NC_005345.2 | + | 40409 | 0.67 | 0.586727 |
Target: 5'- ----cGCCGACGCguCCGUACGgaucGCCGcCg -3' miRNA: 3'- gucauCGGCUGCG--GGCAUGU----UGGCaG- -5' |
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26256 | 3' | -55.7 | NC_005345.2 | + | 37935 | 0.67 | 0.586727 |
Target: 5'- gCAGUcauGCCcAUGCCCGUGCcacaGGCCGg- -3' miRNA: 3'- -GUCAu--CGGcUGCGGGCAUG----UUGGCag -5' |
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26256 | 3' | -55.7 | NC_005345.2 | + | 13403 | 0.67 | 0.586727 |
Target: 5'- cCGGgauGCCGcCGCUCGUuCGGCCGcCg -3' miRNA: 3'- -GUCau-CGGCuGCGGGCAuGUUGGCaG- -5' |
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26256 | 3' | -55.7 | NC_005345.2 | + | 788 | 0.67 | 0.580152 |
Target: 5'- gGGgauGCCGACcggGCCCGcuUACAccugcucgcccggggGCCGUCa -3' miRNA: 3'- gUCau-CGGCUG---CGGGC--AUGU---------------UGGCAG- -5' |
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26256 | 3' | -55.7 | NC_005345.2 | + | 16598 | 0.67 | 0.576871 |
Target: 5'- gCGGUGG-CGugGCCCGacccccucggcgucgGCAugcacGCCGUCa -3' miRNA: 3'- -GUCAUCgGCugCGGGCa--------------UGU-----UGGCAG- -5' |
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26256 | 3' | -55.7 | NC_005345.2 | + | 1359 | 0.68 | 0.554028 |
Target: 5'- aAGUgGGuuGAUGuCCgCGUACAGCgGUCg -3' miRNA: 3'- gUCA-UCggCUGC-GG-GCAUGUUGgCAG- -5' |
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26256 | 3' | -55.7 | NC_005345.2 | + | 44142 | 0.68 | 0.554028 |
Target: 5'- gAGUGGuCCGcCGCCuCGU-CGGCgGUCa -3' miRNA: 3'- gUCAUC-GGCuGCGG-GCAuGUUGgCAG- -5' |
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26256 | 3' | -55.7 | NC_005345.2 | + | 36789 | 0.68 | 0.543243 |
Target: 5'- gAGgcGUCgGGC-CCCGUGCAGCCGa- -3' miRNA: 3'- gUCauCGG-CUGcGGGCAUGUUGGCag -5' |
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26256 | 3' | -55.7 | NC_005345.2 | + | 4646 | 0.68 | 0.543243 |
Target: 5'- ---gGGCCGuCGCCUgcuGUGCcucGGCCGUCg -3' miRNA: 3'- gucaUCGGCuGCGGG---CAUG---UUGGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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