Results 41 - 60 of 77 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26256 | 3' | -55.7 | NC_005345.2 | + | 5433 | 0.68 | 0.532527 |
Target: 5'- gAGUucuucGgCGGCGCCCGgguCGGCCGUa -3' miRNA: 3'- gUCAu----CgGCUGCGGGCau-GUUGGCAg -5' |
|||||||
26256 | 3' | -55.7 | NC_005345.2 | + | 13947 | 0.68 | 0.532527 |
Target: 5'- ---cAGCCagauaGCGCCCGcUGCGAuCCGUCg -3' miRNA: 3'- gucaUCGGc----UGCGGGC-AUGUU-GGCAG- -5' |
|||||||
26256 | 3' | -55.7 | NC_005345.2 | + | 13501 | 0.68 | 0.532527 |
Target: 5'- gCGGUGGCgCGGCGagcaCCCGU-CGAUCGUg -3' miRNA: 3'- -GUCAUCG-GCUGC----GGGCAuGUUGGCAg -5' |
|||||||
26256 | 3' | -55.7 | NC_005345.2 | + | 38773 | 0.68 | 0.532527 |
Target: 5'- -cGUGGggcaCCGACGCCCucgaaggcucGUACucgauGACCGUCa -3' miRNA: 3'- guCAUC----GGCUGCGGG----------CAUG-----UUGGCAG- -5' |
|||||||
26256 | 3' | -55.7 | NC_005345.2 | + | 45102 | 0.68 | 0.532527 |
Target: 5'- -cGU-GUCGGCGCUCGUcgGC-GCCGUCg -3' miRNA: 3'- guCAuCGGCUGCGGGCA--UGuUGGCAG- -5' |
|||||||
26256 | 3' | -55.7 | NC_005345.2 | + | 19326 | 0.68 | 0.529327 |
Target: 5'- aAGUGGCCGAUcugcggGCCCgGUugGAcucccucgggauccCCGUCg -3' miRNA: 3'- gUCAUCGGCUG------CGGG-CAugUU--------------GGCAG- -5' |
|||||||
26256 | 3' | -55.7 | NC_005345.2 | + | 11416 | 0.68 | 0.521889 |
Target: 5'- uCGGUGGUCGACgacagcagguuGCCCGgaaucgGCAcGCUGUCu -3' miRNA: 3'- -GUCAUCGGCUG-----------CGGGCa-----UGU-UGGCAG- -5' |
|||||||
26256 | 3' | -55.7 | NC_005345.2 | + | 34579 | 0.68 | 0.521889 |
Target: 5'- gUAGU-GCCGACacggccggGCCCGUGCcguACCGg- -3' miRNA: 3'- -GUCAuCGGCUG--------CGGGCAUGu--UGGCag -5' |
|||||||
26256 | 3' | -55.7 | NC_005345.2 | + | 3261 | 0.68 | 0.521889 |
Target: 5'- uCGGU-GCCGAgGuacCCCGUGCGcagcugcguGCCGUCc -3' miRNA: 3'- -GUCAuCGGCUgC---GGGCAUGU---------UGGCAG- -5' |
|||||||
26256 | 3' | -55.7 | NC_005345.2 | + | 28110 | 0.68 | 0.515546 |
Target: 5'- gCGGUcGCCGGCGCgCGUGCcgaggaacgcacccgGGCCGg- -3' miRNA: 3'- -GUCAuCGGCUGCGgGCAUG---------------UUGGCag -5' |
|||||||
26256 | 3' | -55.7 | NC_005345.2 | + | 31308 | 0.68 | 0.511334 |
Target: 5'- -uGUcGCCGGgGCCCG-GCGGCCGg- -3' miRNA: 3'- guCAuCGGCUgCGGGCaUGUUGGCag -5' |
|||||||
26256 | 3' | -55.7 | NC_005345.2 | + | 20466 | 0.68 | 0.511334 |
Target: 5'- gAGUAGCCaacgccuCGCCUGUGgcccCGACCGUg -3' miRNA: 3'- gUCAUCGGcu-----GCGGGCAU----GUUGGCAg -5' |
|||||||
26256 | 3' | -55.7 | NC_005345.2 | + | 25242 | 0.68 | 0.508185 |
Target: 5'- aCGGcucGUCGGCGCUCGUGCGGcaccugcucaacucCCGUCg -3' miRNA: 3'- -GUCau-CGGCUGCGGGCAUGUU--------------GGCAG- -5' |
|||||||
26256 | 3' | -55.7 | NC_005345.2 | + | 40695 | 0.69 | 0.500869 |
Target: 5'- aCGGgAGUCGcgaccGCGCCCGUGCucgUCGUCg -3' miRNA: 3'- -GUCaUCGGC-----UGCGGGCAUGuu-GGCAG- -5' |
|||||||
26256 | 3' | -55.7 | NC_005345.2 | + | 6076 | 0.69 | 0.490499 |
Target: 5'- gAGUGGCUGcUGCCCGacgacACGACCGa- -3' miRNA: 3'- gUCAUCGGCuGCGGGCa----UGUUGGCag -5' |
|||||||
26256 | 3' | -55.7 | NC_005345.2 | + | 7077 | 0.69 | 0.490499 |
Target: 5'- -cGUAGCuCGACGCugucgCCGaGCAGCCGg- -3' miRNA: 3'- guCAUCG-GCUGCG-----GGCaUGUUGGCag -5' |
|||||||
26256 | 3' | -55.7 | NC_005345.2 | + | 14413 | 0.69 | 0.48023 |
Target: 5'- -cGUcGCCGACGCCUGccggGCGAUCGa- -3' miRNA: 3'- guCAuCGGCUGCGGGCa---UGUUGGCag -5' |
|||||||
26256 | 3' | -55.7 | NC_005345.2 | + | 8146 | 0.69 | 0.48023 |
Target: 5'- --uUGGCCGcuGCGCCCGUGggaggcaGACCGUg -3' miRNA: 3'- gucAUCGGC--UGCGGGCAUg------UUGGCAg -5' |
|||||||
26256 | 3' | -55.7 | NC_005345.2 | + | 34095 | 0.69 | 0.470067 |
Target: 5'- ---aGGCCGGCGCCCGcgACGgcgacaucGCCGcCg -3' miRNA: 3'- gucaUCGGCUGCGGGCa-UGU--------UGGCaG- -5' |
|||||||
26256 | 3' | -55.7 | NC_005345.2 | + | 4535 | 0.69 | 0.460015 |
Target: 5'- uCAGUAGCCGGCGCU---GCcGCCGcUCc -3' miRNA: 3'- -GUCAUCGGCUGCGGgcaUGuUGGC-AG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home