miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26256 3' -55.7 NC_005345.2 + 28110 0.68 0.515546
Target:  5'- gCGGUcGCCGGCGCgCGUGCcgaggaacgcacccgGGCCGg- -3'
miRNA:   3'- -GUCAuCGGCUGCGgGCAUG---------------UUGGCag -5'
26256 3' -55.7 NC_005345.2 + 6378 0.71 0.39308
Target:  5'- aCAGUcGGCCGAguuccaaGCCCG-GCAACCGcCg -3'
miRNA:   3'- -GUCA-UCGGCUg------CGGGCaUGUUGGCaG- -5'
26256 3' -55.7 NC_005345.2 + 30633 0.66 0.663928
Target:  5'- cCGGacGCCGACGCCgCGUACucgcucGACC-UCg -3'
miRNA:   3'- -GUCauCGGCUGCGG-GCAUG------UUGGcAG- -5'
26256 3' -55.7 NC_005345.2 + 31933 0.66 0.630817
Target:  5'- aCAGUgauGGCCGGCGacaCCG-ACAACCc-- -3'
miRNA:   3'- -GUCA---UCGGCUGCg--GGCaUGUUGGcag -5'
26256 3' -55.7 NC_005345.2 + 13501 0.68 0.532527
Target:  5'- gCGGUGGCgCGGCGagcaCCCGU-CGAUCGUg -3'
miRNA:   3'- -GUCAUCG-GCUGC----GGGCAuGUUGGCAg -5'
26256 3' -55.7 NC_005345.2 + 1900 0.71 0.384045
Target:  5'- gAGgcaGGCCGACGgUUGUACGGgCGUCg -3'
miRNA:   3'- gUCa--UCGGCUGCgGGCAUGUUgGCAG- -5'
26256 3' -55.7 NC_005345.2 + 10753 0.66 0.630817
Target:  5'- -cGUcGCCGACgccgaGCCCcUGcCGGCCGUCg -3'
miRNA:   3'- guCAuCGGCUG-----CGGGcAU-GUUGGCAG- -5'
26256 3' -55.7 NC_005345.2 + 26791 0.72 0.34098
Target:  5'- -cGUGGCCGGCGCCgCGUcGCAggcGCUGcUCg -3'
miRNA:   3'- guCAUCGGCUGCGG-GCA-UGU---UGGC-AG- -5'
26256 3' -55.7 NC_005345.2 + 43744 0.72 0.309121
Target:  5'- ----cGCCGucACGCUCGuUGCGACCGUCg -3'
miRNA:   3'- gucauCGGC--UGCGGGC-AUGUUGGCAG- -5'
26256 3' -55.7 NC_005345.2 + 6076 0.69 0.490499
Target:  5'- gAGUGGCUGcUGCCCGacgacACGACCGa- -3'
miRNA:   3'- gUCAUCGGCuGCGGGCa----UGUUGGCag -5'
26256 3' -55.7 NC_005345.2 + 45102 0.68 0.532527
Target:  5'- -cGU-GUCGGCGCUCGUcgGC-GCCGUCg -3'
miRNA:   3'- guCAuCGGCUGCGGGCA--UGuUGGCAG- -5'
26256 3' -55.7 NC_005345.2 + 42148 0.67 0.608731
Target:  5'- aCGGUGGCgacgcugccuguCGGCGCCCGgcCAGCagCGUg -3'
miRNA:   3'- -GUCAUCG------------GCUGCGGGCauGUUG--GCAg -5'
26256 3' -55.7 NC_005345.2 + 47693 0.66 0.630817
Target:  5'- ---cGGCCGACGgcauCCgGUACGacgaccccguGCCGUCg -3'
miRNA:   3'- gucaUCGGCUGC----GGgCAUGU----------UGGCAG- -5'
26256 3' -55.7 NC_005345.2 + 26690 0.66 0.652907
Target:  5'- gCGGUaaaGGCCGACGCC---GCGACCa-- -3'
miRNA:   3'- -GUCA---UCGGCUGCGGgcaUGUUGGcag -5'
26256 3' -55.7 NC_005345.2 + 22624 0.66 0.674919
Target:  5'- gCGGUGGuuCCGGCGCUCGUGCcggguGCaagggGUCg -3'
miRNA:   3'- -GUCAUC--GGCUGCGGGCAUGu----UGg----CAG- -5'
26256 3' -55.7 NC_005345.2 + 40695 0.69 0.500869
Target:  5'- aCGGgAGUCGcgaccGCGCCCGUGCucgUCGUCg -3'
miRNA:   3'- -GUCaUCGGC-----UGCGGGCAUGuu-GGCAG- -5'
26256 3' -55.7 NC_005345.2 + 12708 0.71 0.39308
Target:  5'- uGGUGGgCGAUgcaGCCCGUGuucGCCGUCg -3'
miRNA:   3'- gUCAUCgGCUG---CGGGCAUgu-UGGCAG- -5'
26256 3' -55.7 NC_005345.2 + 34095 0.69 0.470067
Target:  5'- ---aGGCCGGCGCCCGcgACGgcgacaucGCCGcCg -3'
miRNA:   3'- gucaUCGGCUGCGGGCa-UGU--------UGGCaG- -5'
26256 3' -55.7 NC_005345.2 + 7077 0.69 0.490499
Target:  5'- -cGUAGCuCGACGCugucgCCGaGCAGCCGg- -3'
miRNA:   3'- guCAUCG-GCUGCG-----GGCaUGUUGGCag -5'
26256 3' -55.7 NC_005345.2 + 11020 0.67 0.597714
Target:  5'- aAGUAGgUGACGacCCCGgccGCAGCCGg- -3'
miRNA:   3'- gUCAUCgGCUGC--GGGCa--UGUUGGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.