miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26256 3' -55.7 NC_005345.2 + 14829 0.75 0.204416
Target:  5'- -uGUGGUCGACGCCCGaGCAgcuuGCCGg- -3'
miRNA:   3'- guCAUCGGCUGCGGGCaUGU----UGGCag -5'
26256 3' -55.7 NC_005345.2 + 19326 0.68 0.529327
Target:  5'- aAGUGGCCGAUcugcggGCCCgGUugGAcucccucgggauccCCGUCg -3'
miRNA:   3'- gUCAUCGGCUG------CGGG-CAugUU--------------GGCAG- -5'
26256 3' -55.7 NC_005345.2 + 13501 0.68 0.532527
Target:  5'- gCGGUGGCgCGGCGagcaCCCGU-CGAUCGUg -3'
miRNA:   3'- -GUCAUCG-GCUGC----GGGCAuGUUGGCAg -5'
26256 3' -55.7 NC_005345.2 + 44898 0.66 0.68587
Target:  5'- cCGGUGuucGCCGGCaGCCCG---AGCCGUg -3'
miRNA:   3'- -GUCAU---CGGCUG-CGGGCaugUUGGCAg -5'
26256 3' -55.7 NC_005345.2 + 1900 0.71 0.384045
Target:  5'- gAGgcaGGCCGACGgUUGUACGGgCGUCg -3'
miRNA:   3'- gUCa--UCGGCUGCgGGCAUGUUgGCAG- -5'
26256 3' -55.7 NC_005345.2 + 6378 0.71 0.39308
Target:  5'- aCAGUcGGCCGAguuccaaGCCCG-GCAACCGcCg -3'
miRNA:   3'- -GUCA-UCGGCUg------CGGGCaUGUUGGCaG- -5'
26256 3' -55.7 NC_005345.2 + 7076 0.7 0.411558
Target:  5'- ---cGGCCGAgGCCCGgaagugcACGACgGUCg -3'
miRNA:   3'- gucaUCGGCUgCGGGCa------UGUUGgCAG- -5'
26256 3' -55.7 NC_005345.2 + 14679 0.7 0.420997
Target:  5'- -cGUcGCCGAUGCCgGgcCGGCCGUg -3'
miRNA:   3'- guCAuCGGCUGCGGgCauGUUGGCAg -5'
26256 3' -55.7 NC_005345.2 + 14413 0.69 0.48023
Target:  5'- -cGUcGCCGACGCCUGccggGCGAUCGa- -3'
miRNA:   3'- guCAuCGGCUGCGGGCa---UGUUGGCag -5'
26256 3' -55.7 NC_005345.2 + 28110 0.68 0.515546
Target:  5'- gCGGUcGCCGGCGCgCGUGCcgaggaacgcacccgGGCCGg- -3'
miRNA:   3'- -GUCAuCGGCUGCGgGCAUG---------------UUGGCag -5'
26256 3' -55.7 NC_005345.2 + 40695 0.69 0.500869
Target:  5'- aCGGgAGUCGcgaccGCGCCCGUGCucgUCGUCg -3'
miRNA:   3'- -GUCaUCGGC-----UGCGGGCAUGuu-GGCAG- -5'
26256 3' -55.7 NC_005345.2 + 8146 0.69 0.48023
Target:  5'- --uUGGCCGcuGCGCCCGUGggaggcaGACCGUg -3'
miRNA:   3'- gucAUCGGC--UGCGGGCAUg------UUGGCAg -5'
26256 3' -55.7 NC_005345.2 + 5293 0.75 0.204416
Target:  5'- gAGUcccGGCCGACGCCCcGU-CGACCGg- -3'
miRNA:   3'- gUCA---UCGGCUGCGGG-CAuGUUGGCag -5'
26256 3' -55.7 NC_005345.2 + 25242 0.68 0.508185
Target:  5'- aCGGcucGUCGGCGCUCGUGCGGcaccugcucaacucCCGUCg -3'
miRNA:   3'- -GUCau-CGGCUGCGGGCAUGUU--------------GGCAG- -5'
26256 3' -55.7 NC_005345.2 + 43744 0.72 0.309121
Target:  5'- ----cGCCGucACGCUCGuUGCGACCGUCg -3'
miRNA:   3'- gucauCGGC--UGCGGGC-AUGUUGGCAG- -5'
26256 3' -55.7 NC_005345.2 + 34095 0.69 0.470067
Target:  5'- ---aGGCCGGCGCCCGcgACGgcgacaucGCCGcCg -3'
miRNA:   3'- gucaUCGGCUGCGGGCa-UGU--------UGGCaG- -5'
26256 3' -55.7 NC_005345.2 + 20466 0.68 0.511334
Target:  5'- gAGUAGCCaacgccuCGCCUGUGgcccCGACCGUg -3'
miRNA:   3'- gUCAUCGGcu-----GCGGGCAU----GUUGGCAg -5'
26256 3' -55.7 NC_005345.2 + 5433 0.68 0.532527
Target:  5'- gAGUucuucGgCGGCGCCCGgguCGGCCGUa -3'
miRNA:   3'- gUCAu----CgGCUGCGGGCau-GUUGGCAg -5'
26256 3' -55.7 NC_005345.2 + 26791 0.72 0.34098
Target:  5'- -cGUGGCCGGCGCCgCGUcGCAggcGCUGcUCg -3'
miRNA:   3'- guCAUCGGCUGCGG-GCA-UGU---UGGC-AG- -5'
26256 3' -55.7 NC_005345.2 + 12708 0.71 0.39308
Target:  5'- uGGUGGgCGAUgcaGCCCGUGuucGCCGUCg -3'
miRNA:   3'- gUCAUCgGCUG---CGGGCAUgu-UGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.