miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26256 3' -55.7 NC_005345.2 + 283 0.66 0.68587
Target:  5'- ---cGGCCGGCgaauGCUgGUACAACCacGUCa -3'
miRNA:   3'- gucaUCGGCUG----CGGgCAUGUUGG--CAG- -5'
26256 3' -55.7 NC_005345.2 + 788 0.67 0.580152
Target:  5'- gGGgauGCCGACcggGCCCGcuUACAccugcucgcccggggGCCGUCa -3'
miRNA:   3'- gUCau-CGGCUG---CGGGC--AUGU---------------UGGCAG- -5'
26256 3' -55.7 NC_005345.2 + 1359 0.68 0.554028
Target:  5'- aAGUgGGuuGAUGuCCgCGUACAGCgGUCg -3'
miRNA:   3'- gUCA-UCggCUGC-GG-GCAUGUUGgCAG- -5'
26256 3' -55.7 NC_005345.2 + 1900 0.71 0.384045
Target:  5'- gAGgcaGGCCGACGgUUGUACGGgCGUCg -3'
miRNA:   3'- gUCa--UCGGCUGCgGGCAUGUUgGCAG- -5'
26256 3' -55.7 NC_005345.2 + 3261 0.68 0.521889
Target:  5'- uCGGU-GCCGAgGuacCCCGUGCGcagcugcguGCCGUCc -3'
miRNA:   3'- -GUCAuCGGCUgC---GGGCAUGU---------UGGCAG- -5'
26256 3' -55.7 NC_005345.2 + 4535 0.69 0.460015
Target:  5'- uCAGUAGCCGGCGCU---GCcGCCGcUCc -3'
miRNA:   3'- -GUCAUCGGCUGCGGgcaUGuUGGC-AG- -5'
26256 3' -55.7 NC_005345.2 + 4646 0.68 0.543243
Target:  5'- ---gGGCCGuCGCCUgcuGUGCcucGGCCGUCg -3'
miRNA:   3'- gucaUCGGCuGCGGG---CAUG---UUGGCAG- -5'
26256 3' -55.7 NC_005345.2 + 4687 0.71 0.39308
Target:  5'- ---cGGCuCGACGCCCGUGCGGCg--- -3'
miRNA:   3'- gucaUCG-GCUGCGGGCAUGUUGgcag -5'
26256 3' -55.7 NC_005345.2 + 5293 0.75 0.204416
Target:  5'- gAGUcccGGCCGACGCCCcGU-CGACCGg- -3'
miRNA:   3'- gUCA---UCGGCUGCGGG-CAuGUUGGCag -5'
26256 3' -55.7 NC_005345.2 + 5433 0.68 0.532527
Target:  5'- gAGUucuucGgCGGCGCCCGgguCGGCCGUa -3'
miRNA:   3'- gUCAu----CgGCUGCGGGCau-GUUGGCAg -5'
26256 3' -55.7 NC_005345.2 + 6076 0.69 0.490499
Target:  5'- gAGUGGCUGcUGCCCGacgacACGACCGa- -3'
miRNA:   3'- gUCAUCGGCuGCGGGCa----UGUUGGCag -5'
26256 3' -55.7 NC_005345.2 + 6378 0.71 0.39308
Target:  5'- aCAGUcGGCCGAguuccaaGCCCG-GCAACCGcCg -3'
miRNA:   3'- -GUCA-UCGGCUg------CGGGCaUGUUGGCaG- -5'
26256 3' -55.7 NC_005345.2 + 7076 0.7 0.411558
Target:  5'- ---cGGCCGAgGCCCGgaagugcACGACgGUCg -3'
miRNA:   3'- gucaUCGGCUgCGGGCa------UGUUGgCAG- -5'
26256 3' -55.7 NC_005345.2 + 7077 0.69 0.490499
Target:  5'- -cGUAGCuCGACGCugucgCCGaGCAGCCGg- -3'
miRNA:   3'- guCAUCG-GCUGCG-----GGCaUGUUGGCag -5'
26256 3' -55.7 NC_005345.2 + 7137 0.66 0.652907
Target:  5'- cCGGgcggGGCaCGugGCCCGggACGggucggacccGCUGUCg -3'
miRNA:   3'- -GUCa---UCG-GCugCGGGCa-UGU----------UGGCAG- -5'
26256 3' -55.7 NC_005345.2 + 7946 0.66 0.630817
Target:  5'- aAGUcgAGCCGGCGggcggggauCCCGU-CggUCGUCg -3'
miRNA:   3'- gUCA--UCGGCUGC---------GGGCAuGuuGGCAG- -5'
26256 3' -55.7 NC_005345.2 + 8146 0.69 0.48023
Target:  5'- --uUGGCCGcuGCGCCCGUGggaggcaGACCGUg -3'
miRNA:   3'- gucAUCGGC--UGCGGGCAUg------UUGGCAg -5'
26256 3' -55.7 NC_005345.2 + 8715 0.67 0.619769
Target:  5'- -uGUGGCCGAcuCGUCCGUcgccggcgGCGAuCCGUa -3'
miRNA:   3'- guCAUCGGCU--GCGGGCA--------UGUU-GGCAg -5'
26256 3' -55.7 NC_005345.2 + 9110 0.66 0.663928
Target:  5'- -uGUGGUCGAgcUGCUCG-ACucuGCCGUCg -3'
miRNA:   3'- guCAUCGGCU--GCGGGCaUGu--UGGCAG- -5'
26256 3' -55.7 NC_005345.2 + 9820 0.66 0.640762
Target:  5'- cCGGUGccGCCGAUGCCCGauCAGgggugucUCGUCg -3'
miRNA:   3'- -GUCAU--CGGCUGCGGGCauGUU-------GGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.