miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26256 3' -55.7 NC_005345.2 + 47237 1.1 0.000715
Target:  5'- gCAGUAGCCGACGCCCGUACAACCGUCg -3'
miRNA:   3'- -GUCAUCGGCUGCGGGCAUGUUGGCAG- -5'
26256 3' -55.7 NC_005345.2 + 5293 0.75 0.204416
Target:  5'- gAGUcccGGCCGACGCCCcGU-CGACCGg- -3'
miRNA:   3'- gUCA---UCGGCUGCGGG-CAuGUUGGCag -5'
26256 3' -55.7 NC_005345.2 + 14829 0.75 0.204416
Target:  5'- -uGUGGUCGACGCCCGaGCAgcuuGCCGg- -3'
miRNA:   3'- guCAUCGGCUGCGGGCaUGU----UGGCag -5'
26256 3' -55.7 NC_005345.2 + 24646 0.75 0.209386
Target:  5'- gCGGUGGUCGACcaggaucccgcggGCCCGggacCGGCCGUCg -3'
miRNA:   3'- -GUCAUCGGCUG-------------CGGGCau--GUUGGCAG- -5'
26256 3' -55.7 NC_005345.2 + 33831 0.73 0.294062
Target:  5'- ---cGGCCGACGCaCCGaccUACAGCCGg- -3'
miRNA:   3'- gucaUCGGCUGCG-GGC---AUGUUGGCag -5'
26256 3' -55.7 NC_005345.2 + 43744 0.72 0.309121
Target:  5'- ----cGCCGucACGCUCGuUGCGACCGUCg -3'
miRNA:   3'- gucauCGGC--UGCGGGC-AUGUUGGCAG- -5'
26256 3' -55.7 NC_005345.2 + 34220 0.72 0.332798
Target:  5'- ----cGCCGcCGCCCGcUGCAGCCGcCg -3'
miRNA:   3'- gucauCGGCuGCGGGC-AUGUUGGCaG- -5'
26256 3' -55.7 NC_005345.2 + 26791 0.72 0.34098
Target:  5'- -cGUGGCCGGCGCCgCGUcGCAggcGCUGcUCg -3'
miRNA:   3'- guCAUCGGCUGCGG-GCA-UGU---UGGC-AG- -5'
26256 3' -55.7 NC_005345.2 + 19161 0.71 0.366393
Target:  5'- -cGUcGCCGG-GCCCGUACGGcugcCCGUCg -3'
miRNA:   3'- guCAuCGGCUgCGGGCAUGUU----GGCAG- -5'
26256 3' -55.7 NC_005345.2 + 1900 0.71 0.384045
Target:  5'- gAGgcaGGCCGACGgUUGUACGGgCGUCg -3'
miRNA:   3'- gUCa--UCGGCUGCgGGCAUGUUgGCAG- -5'
26256 3' -55.7 NC_005345.2 + 6378 0.71 0.39308
Target:  5'- aCAGUcGGCCGAguuccaaGCCCG-GCAACCGcCg -3'
miRNA:   3'- -GUCA-UCGGCUg------CGGGCaUGUUGGCaG- -5'
26256 3' -55.7 NC_005345.2 + 4687 0.71 0.39308
Target:  5'- ---cGGCuCGACGCCCGUGCGGCg--- -3'
miRNA:   3'- gucaUCG-GCUGCGGGCAUGUUGgcag -5'
26256 3' -55.7 NC_005345.2 + 12708 0.71 0.39308
Target:  5'- uGGUGGgCGAUgcaGCCCGUGuucGCCGUCg -3'
miRNA:   3'- gUCAUCgGCUG---CGGGCAUgu-UGGCAG- -5'
26256 3' -55.7 NC_005345.2 + 7076 0.7 0.411558
Target:  5'- ---cGGCCGAgGCCCGgaagugcACGACgGUCg -3'
miRNA:   3'- gucaUCGGCUgCGGGCa------UGUUGgCAG- -5'
26256 3' -55.7 NC_005345.2 + 14679 0.7 0.420997
Target:  5'- -cGUcGCCGAUGCCgGgcCGGCCGUg -3'
miRNA:   3'- guCAuCGGCUGCGGgCauGUUGGCAg -5'
26256 3' -55.7 NC_005345.2 + 34745 0.7 0.430565
Target:  5'- gCAGgcGUCGGCGa-CGUGCAGCCGg- -3'
miRNA:   3'- -GUCauCGGCUGCggGCAUGUUGGCag -5'
26256 3' -55.7 NC_005345.2 + 46611 0.7 0.450078
Target:  5'- uCGG-GGCCGGCGCCgGgUGCc-CCGUCg -3'
miRNA:   3'- -GUCaUCGGCUGCGGgC-AUGuuGGCAG- -5'
26256 3' -55.7 NC_005345.2 + 4535 0.69 0.460015
Target:  5'- uCAGUAGCCGGCGCU---GCcGCCGcUCc -3'
miRNA:   3'- -GUCAUCGGCUGCGGgcaUGuUGGC-AG- -5'
26256 3' -55.7 NC_005345.2 + 34095 0.69 0.470067
Target:  5'- ---aGGCCGGCGCCCGcgACGgcgacaucGCCGcCg -3'
miRNA:   3'- gucaUCGGCUGCGGGCa-UGU--------UGGCaG- -5'
26256 3' -55.7 NC_005345.2 + 8146 0.69 0.48023
Target:  5'- --uUGGCCGcuGCGCCCGUGggaggcaGACCGUg -3'
miRNA:   3'- gucAUCGGC--UGCGGGCAUg------UUGGCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.