miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26256 3' -55.7 NC_005345.2 + 47693 0.66 0.630817
Target:  5'- ---cGGCCGACGgcauCCgGUACGacgaccccguGCCGUCg -3'
miRNA:   3'- gucaUCGGCUGC----GGgCAUGU----------UGGCAG- -5'
26256 3' -55.7 NC_005345.2 + 47237 1.1 0.000715
Target:  5'- gCAGUAGCCGACGCCCGUACAACCGUCg -3'
miRNA:   3'- -GUCAUCGGCUGCGGGCAUGUUGGCAG- -5'
26256 3' -55.7 NC_005345.2 + 46611 0.7 0.450078
Target:  5'- uCGG-GGCCGGCGCCgGgUGCc-CCGUCg -3'
miRNA:   3'- -GUCaUCGGCUGCGGgC-AUGuuGGCAG- -5'
26256 3' -55.7 NC_005345.2 + 46150 0.66 0.663928
Target:  5'- --cUGGCCucGGcCGCCCGUACcGCCGa- -3'
miRNA:   3'- gucAUCGG--CU-GCGGGCAUGuUGGCag -5'
26256 3' -55.7 NC_005345.2 + 45102 0.68 0.532527
Target:  5'- -cGU-GUCGGCGCUCGUcgGC-GCCGUCg -3'
miRNA:   3'- guCAuCGGCUGCGGGCA--UGuUGGCAG- -5'
26256 3' -55.7 NC_005345.2 + 44898 0.66 0.68587
Target:  5'- cCGGUGuucGCCGGCaGCCCG---AGCCGUg -3'
miRNA:   3'- -GUCAU---CGGCUG-CGGGCaugUUGGCAg -5'
26256 3' -55.7 NC_005345.2 + 44142 0.68 0.554028
Target:  5'- gAGUGGuCCGcCGCCuCGU-CGGCgGUCa -3'
miRNA:   3'- gUCAUC-GGCuGCGG-GCAuGUUGgCAG- -5'
26256 3' -55.7 NC_005345.2 + 43744 0.72 0.309121
Target:  5'- ----cGCCGucACGCUCGuUGCGACCGUCg -3'
miRNA:   3'- gucauCGGC--UGCGGGC-AUGUUGGCAG- -5'
26256 3' -55.7 NC_005345.2 + 42148 0.67 0.608731
Target:  5'- aCGGUGGCgacgcugccuguCGGCGCCCGgcCAGCagCGUg -3'
miRNA:   3'- -GUCAUCG------------GCUGCGGGCauGUUG--GCAg -5'
26256 3' -55.7 NC_005345.2 + 40701 0.66 0.674919
Target:  5'- -uGUGGCCGGugcCGUCCGUccacacCGACCGcUCg -3'
miRNA:   3'- guCAUCGGCU---GCGGGCAu-----GUUGGC-AG- -5'
26256 3' -55.7 NC_005345.2 + 40695 0.69 0.500869
Target:  5'- aCGGgAGUCGcgaccGCGCCCGUGCucgUCGUCg -3'
miRNA:   3'- -GUCaUCGGC-----UGCGGGCAUGuu-GGCAG- -5'
26256 3' -55.7 NC_005345.2 + 40409 0.67 0.586727
Target:  5'- ----cGCCGACGCguCCGUACGgaucGCCGcCg -3'
miRNA:   3'- gucauCGGCUGCG--GGCAUGU----UGGCaG- -5'
26256 3' -55.7 NC_005345.2 + 39977 0.66 0.630817
Target:  5'- uCAGcucGCacaCGACcgGCCCGUGCAcccgcGCCGUCa -3'
miRNA:   3'- -GUCau-CG---GCUG--CGGGCAUGU-----UGGCAG- -5'
26256 3' -55.7 NC_005345.2 + 39787 0.67 0.596614
Target:  5'- gUAGUGGUCGAgcccggcCGCCCGcagccacCAugCGUCg -3'
miRNA:   3'- -GUCAUCGGCU-------GCGGGCau-----GUugGCAG- -5'
26256 3' -55.7 NC_005345.2 + 39015 0.66 0.671626
Target:  5'- gAGcGGCCGcCGCCUGUaccucggggaugggGCAGUCGUCg -3'
miRNA:   3'- gUCaUCGGCuGCGGGCA--------------UGUUGGCAG- -5'
26256 3' -55.7 NC_005345.2 + 38773 0.68 0.532527
Target:  5'- -cGUGGggcaCCGACGCCCucgaaggcucGUACucgauGACCGUCa -3'
miRNA:   3'- guCAUC----GGCUGCGGG----------CAUG-----UUGGCAG- -5'
26256 3' -55.7 NC_005345.2 + 37935 0.67 0.586727
Target:  5'- gCAGUcauGCCcAUGCCCGUGCcacaGGCCGg- -3'
miRNA:   3'- -GUCAu--CGGcUGCGGGCAUG----UUGGCag -5'
26256 3' -55.7 NC_005345.2 + 37493 0.66 0.630817
Target:  5'- aAGuUGGCCGcuacCGCcgCCGUGCAGgCGUCu -3'
miRNA:   3'- gUC-AUCGGCu---GCG--GGCAUGUUgGCAG- -5'
26256 3' -55.7 NC_005345.2 + 37433 0.66 0.68587
Target:  5'- uGGUAcGCggCGGCgGCCCGcugguCGGCCGUCg -3'
miRNA:   3'- gUCAU-CG--GCUG-CGGGCau---GUUGGCAG- -5'
26256 3' -55.7 NC_005345.2 + 37297 0.66 0.663928
Target:  5'- gCAG-GGCCGAUGCCC--AC-GCCGUg -3'
miRNA:   3'- -GUCaUCGGCUGCGGGcaUGuUGGCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.