miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26256 3' -55.7 NC_005345.2 + 44142 0.68 0.554028
Target:  5'- gAGUGGuCCGcCGCCuCGU-CGGCgGUCa -3'
miRNA:   3'- gUCAUC-GGCuGCGG-GCAuGUUGgCAG- -5'
26256 3' -55.7 NC_005345.2 + 21575 0.67 0.597714
Target:  5'- cCGGUAauCCGGCGCCCG-GCcGCCGg- -3'
miRNA:   3'- -GUCAUc-GGCUGCGGGCaUGuUGGCag -5'
26256 3' -55.7 NC_005345.2 + 11564 0.67 0.597714
Target:  5'- ---gAGCCGGuCGCCCGccUGCAGCCc-- -3'
miRNA:   3'- gucaUCGGCU-GCGGGC--AUGUUGGcag -5'
26256 3' -55.7 NC_005345.2 + 11020 0.67 0.597714
Target:  5'- aAGUAGgUGACGacCCCGgccGCAGCCGg- -3'
miRNA:   3'- gUCAUCgGCUGC--GGGCa--UGUUGGCag -5'
26256 3' -55.7 NC_005345.2 + 39787 0.67 0.596614
Target:  5'- gUAGUGGUCGAgcccggcCGCCCGcagccacCAugCGUCg -3'
miRNA:   3'- -GUCAUCGGCU-------GCGGGCau-----GUugGCAG- -5'
26256 3' -55.7 NC_005345.2 + 40409 0.67 0.586727
Target:  5'- ----cGCCGACGCguCCGUACGgaucGCCGcCg -3'
miRNA:   3'- gucauCGGCUGCG--GGCAUGU----UGGCaG- -5'
26256 3' -55.7 NC_005345.2 + 37935 0.67 0.586727
Target:  5'- gCAGUcauGCCcAUGCCCGUGCcacaGGCCGg- -3'
miRNA:   3'- -GUCAu--CGGcUGCGGGCAUG----UUGGCag -5'
26256 3' -55.7 NC_005345.2 + 13403 0.67 0.586727
Target:  5'- cCGGgauGCCGcCGCUCGUuCGGCCGcCg -3'
miRNA:   3'- -GUCau-CGGCuGCGGGCAuGUUGGCaG- -5'
26256 3' -55.7 NC_005345.2 + 788 0.67 0.580152
Target:  5'- gGGgauGCCGACcggGCCCGcuUACAccugcucgcccggggGCCGUCa -3'
miRNA:   3'- gUCau-CGGCUG---CGGGC--AUGU---------------UGGCAG- -5'
26256 3' -55.7 NC_005345.2 + 21258 0.67 0.608731
Target:  5'- --cUGGUCGuCGUCCGUGuCGucGCCGUCg -3'
miRNA:   3'- gucAUCGGCuGCGGGCAU-GU--UGGCAG- -5'
26256 3' -55.7 NC_005345.2 + 13839 0.67 0.619769
Target:  5'- cCGGaAGCuCGGCGCgaGgACGGCCGUCc -3'
miRNA:   3'- -GUCaUCG-GCUGCGggCaUGUUGGCAG- -5'
26256 3' -55.7 NC_005345.2 + 39977 0.66 0.630817
Target:  5'- uCAGcucGCacaCGACcgGCCCGUGCAcccgcGCCGUCa -3'
miRNA:   3'- -GUCau-CG---GCUG--CGGGCAUGU-----UGGCAG- -5'
26256 3' -55.7 NC_005345.2 + 40701 0.66 0.674919
Target:  5'- -uGUGGCCGGugcCGUCCGUccacacCGACCGcUCg -3'
miRNA:   3'- guCAUCGGCU---GCGGGCAu-----GUUGGC-AG- -5'
26256 3' -55.7 NC_005345.2 + 39015 0.66 0.671626
Target:  5'- gAGcGGCCGcCGCCUGUaccucggggaugggGCAGUCGUCg -3'
miRNA:   3'- gUCaUCGGCuGCGGGCA--------------UGUUGGCAG- -5'
26256 3' -55.7 NC_005345.2 + 9110 0.66 0.663928
Target:  5'- -uGUGGUCGAgcUGCUCG-ACucuGCCGUCg -3'
miRNA:   3'- guCAUCGGCU--GCGGGCaUGu--UGGCAG- -5'
26256 3' -55.7 NC_005345.2 + 37297 0.66 0.663928
Target:  5'- gCAG-GGCCGAUGCCC--AC-GCCGUg -3'
miRNA:   3'- -GUCaUCGGCUGCGGGcaUGuUGGCAg -5'
26256 3' -55.7 NC_005345.2 + 21452 0.66 0.662827
Target:  5'- gCAGggcuGCCGugucggcGCGCCCGgucacGCGGCCGg- -3'
miRNA:   3'- -GUCau--CGGC-------UGCGGGCa----UGUUGGCag -5'
26256 3' -55.7 NC_005345.2 + 13747 0.66 0.630817
Target:  5'- gCGGU-GCCGAcCGCCCGcAUc-CCGUCc -3'
miRNA:   3'- -GUCAuCGGCU-GCGGGCaUGuuGGCAG- -5'
26256 3' -55.7 NC_005345.2 + 10572 0.66 0.630817
Target:  5'- ---cGGCCGcgaGCGCCaCGUAC-GCCGUg -3'
miRNA:   3'- gucaUCGGC---UGCGG-GCAUGuUGGCAg -5'
26256 3' -55.7 NC_005345.2 + 7946 0.66 0.630817
Target:  5'- aAGUcgAGCCGGCGggcggggauCCCGU-CggUCGUCg -3'
miRNA:   3'- gUCA--UCGGCUGC---------GGGCAuGuuGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.