miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26258 3' -51.5 NC_005345.2 + 3082 0.67 0.836824
Target:  5'- gGCGGCcccggccgccUGAUCGAcccucgggccccGGACAUaccgaGGGGCCg -3'
miRNA:   3'- gCGUCG----------ACUAGUU------------CCUGUAg----CUCUGG- -5'
26258 3' -51.5 NC_005345.2 + 3270 0.66 0.879427
Target:  5'- uGCAGaccgUGAUCGAcGGCGUCGGGcuCCc -3'
miRNA:   3'- gCGUCg---ACUAGUUcCUGUAGCUCu-GG- -5'
26258 3' -51.5 NC_005345.2 + 3281 0.79 0.247558
Target:  5'- gCGCAGCUGcgugccguccacGUCGAGGGCGUcggCGAGugCu -3'
miRNA:   3'- -GCGUCGAC------------UAGUUCCUGUA---GCUCugG- -5'
26258 3' -51.5 NC_005345.2 + 3791 0.72 0.556238
Target:  5'- aCGUGGC-GAUCAcgucgacGGGCAgaUCGAGGCCg -3'
miRNA:   3'- -GCGUCGaCUAGUu------CCUGU--AGCUCUGG- -5'
26258 3' -51.5 NC_005345.2 + 4509 0.76 0.346151
Target:  5'- cCGCAGCaGGUCGAGGACGUau-GACg -3'
miRNA:   3'- -GCGUCGaCUAGUUCCUGUAgcuCUGg -5'
26258 3' -51.5 NC_005345.2 + 4832 0.66 0.887165
Target:  5'- gGCGGCccacaggaUGAUCccgacguGuGACGUCGAGuACCa -3'
miRNA:   3'- gCGUCG--------ACUAGuu-----C-CUGUAGCUC-UGG- -5'
26258 3' -51.5 NC_005345.2 + 5664 0.67 0.818115
Target:  5'- gGCGGC-GAUCGAGGucaccuguGCGUCGGuGAgCg -3'
miRNA:   3'- gCGUCGaCUAGUUCC--------UGUAGCU-CUgG- -5'
26258 3' -51.5 NC_005345.2 + 6969 0.66 0.863146
Target:  5'- uCGCuucGCUGcggCAGGGcuuUCGGGGCCg -3'
miRNA:   3'- -GCGu--CGACua-GUUCCuguAGCUCUGG- -5'
26258 3' -51.5 NC_005345.2 + 7187 0.66 0.882555
Target:  5'- uGCGGCaGAUCGcGGACgacaucgcgaaggguGUCGAcacggcGACCg -3'
miRNA:   3'- gCGUCGaCUAGUuCCUG---------------UAGCU------CUGG- -5'
26258 3' -51.5 NC_005345.2 + 7846 0.68 0.778293
Target:  5'- gGCAGCUGAUCAcccucgcgcAGGuguacagccuGCcgUGGGACg -3'
miRNA:   3'- gCGUCGACUAGU---------UCC----------UGuaGCUCUGg -5'
26258 3' -51.5 NC_005345.2 + 10516 0.67 0.818115
Target:  5'- gGCAGgacggGAUCGccgAGGccgACGUCGAGAUCg -3'
miRNA:   3'- gCGUCga---CUAGU---UCC---UGUAGCUCUGG- -5'
26258 3' -51.5 NC_005345.2 + 10639 0.75 0.400305
Target:  5'- aGCAGCacgcgUGAcUCAGGGACcgCG-GACCg -3'
miRNA:   3'- gCGUCG-----ACU-AGUUCCUGuaGCuCUGG- -5'
26258 3' -51.5 NC_005345.2 + 12402 0.7 0.691723
Target:  5'- aGCGGCgagGcgCGAGucggccgauGACGUCGAGGCg -3'
miRNA:   3'- gCGUCGa--CuaGUUC---------CUGUAGCUCUGg -5'
26258 3' -51.5 NC_005345.2 + 12457 0.66 0.854617
Target:  5'- gCGCAGCUcg-C-GGGGCAggCGAGGCg -3'
miRNA:   3'- -GCGUCGAcuaGuUCCUGUa-GCUCUGg -5'
26258 3' -51.5 NC_005345.2 + 12550 0.72 0.534118
Target:  5'- gCGCAgcGCUGG-CAGGuGGCAUCGuGACUg -3'
miRNA:   3'- -GCGU--CGACUaGUUC-CUGUAGCuCUGG- -5'
26258 3' -51.5 NC_005345.2 + 13036 0.72 0.578616
Target:  5'- uGCGGCgaccgGAUCAccggcAGcGGCAUCGuguGGACCg -3'
miRNA:   3'- gCGUCGa----CUAGU-----UC-CUGUAGC---UCUGG- -5'
26258 3' -51.5 NC_005345.2 + 14604 0.71 0.612511
Target:  5'- aGCGGCUccgGAUCGacGGGuACGcccgCGAGGCCg -3'
miRNA:   3'- gCGUCGA---CUAGU--UCC-UGUa---GCUCUGG- -5'
26258 3' -51.5 NC_005345.2 + 14885 0.8 0.19381
Target:  5'- gCGCAGCcGGUCAAGGGuCAggUCGAGgACCg -3'
miRNA:   3'- -GCGUCGaCUAGUUCCU-GU--AGCUC-UGG- -5'
26258 3' -51.5 NC_005345.2 + 14964 0.8 0.218686
Target:  5'- cCGCGGCUGAUCAgucggucggggccccGGGcCAcuccUCGGGGCCg -3'
miRNA:   3'- -GCGUCGACUAGU---------------UCCuGU----AGCUCUGG- -5'
26258 3' -51.5 NC_005345.2 + 16334 0.67 0.818115
Target:  5'- gCGCAGCgaaagcucGUCGGcGGCAUCGcGGCCg -3'
miRNA:   3'- -GCGUCGac------UAGUUcCUGUAGCuCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.