miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26258 3' -51.5 NC_005345.2 + 31834 0.84 0.107797
Target:  5'- gGCAGCUGGUCAAGGACGgguUCGcccguccggccgacaAGACCc -3'
miRNA:   3'- gCGUCGACUAGUUCCUGU---AGC---------------UCUGG- -5'
26258 3' -51.5 NC_005345.2 + 7846 0.68 0.778293
Target:  5'- gGCAGCUGAUCAcccucgcgcAGGuguacagccuGCcgUGGGACg -3'
miRNA:   3'- gCGUCGACUAGU---------UCC----------UGuaGCUCUGg -5'
26258 3' -51.5 NC_005345.2 + 34398 0.68 0.798574
Target:  5'- cCGC-GCUGggCAAGGugGgcggCGccgcGGACCg -3'
miRNA:   3'- -GCGuCGACuaGUUCCugUa---GC----UCUGG- -5'
26258 3' -51.5 NC_005345.2 + 21111 0.66 0.894625
Target:  5'- cCGCcgaaAGC---UCGAcGACGUCGAGGCCu -3'
miRNA:   3'- -GCG----UCGacuAGUUcCUGUAGCUCUGG- -5'
26258 3' -51.5 NC_005345.2 + 12550 0.72 0.534118
Target:  5'- gCGCAgcGCUGG-CAGGuGGCAUCGuGACUg -3'
miRNA:   3'- -GCGU--CGACUaGUUC-CUGUAGCuCUGG- -5'
26258 3' -51.5 NC_005345.2 + 26124 0.72 0.57188
Target:  5'- uGCAGCUGGUCGAGuucgcccggaugcccGACcUCGgcgaGGACCc -3'
miRNA:   3'- gCGUCGACUAGUUC---------------CUGuAGC----UCUGG- -5'
26258 3' -51.5 NC_005345.2 + 40179 0.71 0.594396
Target:  5'- gCGCAGCUgcgGAUCGAGGccggcgugcagcucgGCAgcuacgUCGAGACg -3'
miRNA:   3'- -GCGUCGA---CUAGUUCC---------------UGU------AGCUCUGg -5'
26258 3' -51.5 NC_005345.2 + 14604 0.71 0.612511
Target:  5'- aGCGGCUccgGAUCGacGGGuACGcccgCGAGGCCg -3'
miRNA:   3'- gCGUCGA---CUAGU--UCC-UGUa---GCUCUGG- -5'
26258 3' -51.5 NC_005345.2 + 32918 0.7 0.669219
Target:  5'- aCGCAGC----CGGGGGaAUCGAGGCCu -3'
miRNA:   3'- -GCGUCGacuaGUUCCUgUAGCUCUGG- -5'
26258 3' -51.5 NC_005345.2 + 43337 0.69 0.724988
Target:  5'- aCGcCGGCUGGUCcuacAAGGGCGagGGGguGCCg -3'
miRNA:   3'- -GC-GUCGACUAG----UUCCUGUagCUC--UGG- -5'
26258 3' -51.5 NC_005345.2 + 24461 0.7 0.691723
Target:  5'- gGCGGCcGAcuaUCAGGcGAuCAUCGAcGGCCg -3'
miRNA:   3'- gCGUCGaCU---AGUUC-CU-GUAGCU-CUGG- -5'
26258 3' -51.5 NC_005345.2 + 41783 0.7 0.657906
Target:  5'- aGCAucGCUGcacUCAccgacgccccGGACGUCGAGACCc -3'
miRNA:   3'- gCGU--CGACu--AGUu---------CCUGUAGCUCUGG- -5'
26258 3' -51.5 NC_005345.2 + 14964 0.8 0.218686
Target:  5'- cCGCGGCUGAUCAgucggucggggccccGGGcCAcuccUCGGGGCCg -3'
miRNA:   3'- -GCGUCGACUAGU---------------UCCuGU----AGCUCUGG- -5'
26258 3' -51.5 NC_005345.2 + 30529 0.69 0.713981
Target:  5'- gGCAGCggacGAUC--GGGCAguaugcCGAGACCc -3'
miRNA:   3'- gCGUCGa---CUAGuuCCUGUa-----GCUCUGG- -5'
26258 3' -51.5 NC_005345.2 + 10639 0.75 0.400305
Target:  5'- aGCAGCacgcgUGAcUCAGGGACcgCG-GACCg -3'
miRNA:   3'- gCGUCG-----ACU-AGUUCCUGuaGCuCUGG- -5'
26258 3' -51.5 NC_005345.2 + 31153 0.71 0.635215
Target:  5'- gGCGGUcGAggccUCGacacGGGAgAUCGAGGCCg -3'
miRNA:   3'- gCGUCGaCU----AGU----UCCUgUAGCUCUGG- -5'
26258 3' -51.5 NC_005345.2 + 20242 0.69 0.724988
Target:  5'- gCGUGGCacGAUCGAGG-CAUgGAcGACCu -3'
miRNA:   3'- -GCGUCGa-CUAGUUCCuGUAgCU-CUGG- -5'
26258 3' -51.5 NC_005345.2 + 37631 0.68 0.78852
Target:  5'- --gAGCUGAaCGcGuACGUCGAGACCg -3'
miRNA:   3'- gcgUCGACUaGUuCcUGUAGCUCUGG- -5'
26258 3' -51.5 NC_005345.2 + 33910 0.74 0.436284
Target:  5'- gGCAGCUGAuccguacgggcaugUCAAGGACG-CGAagcaggcguucGACCu -3'
miRNA:   3'- gCGUCGACU--------------AGUUCCUGUaGCU-----------CUGG- -5'
26258 3' -51.5 NC_005345.2 + 13036 0.72 0.578616
Target:  5'- uGCGGCgaccgGAUCAccggcAGcGGCAUCGuguGGACCg -3'
miRNA:   3'- gCGUCGa----CUAGU-----UC-CUGUAGC---UCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.