Results 41 - 60 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26258 | 5' | -59.7 | NC_005345.2 | + | 46522 | 0.72 | 0.19316 |
Target: 5'- --cGGUCAGUCCGCGccgcuccAUCGCGCuGCGg -3' miRNA: 3'- cacUCGGUCAGGCGC-------UAGCGCG-CGCg -5' |
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26258 | 5' | -59.7 | NC_005345.2 | + | 34522 | 0.72 | 0.193667 |
Target: 5'- -cGAGgCGGgCCGCGGccUCGCGgGCGUa -3' miRNA: 3'- caCUCgGUCaGGCGCU--AGCGCgCGCG- -5' |
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26258 | 5' | -59.7 | NC_005345.2 | + | 25450 | 0.71 | 0.20943 |
Target: 5'- -aGAGCCccGUaCCGC--UCGCGUGCGCu -3' miRNA: 3'- caCUCGGu-CA-GGCGcuAGCGCGCGCG- -5' |
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26258 | 5' | -59.7 | NC_005345.2 | + | 2823 | 0.67 | 0.377612 |
Target: 5'- cUGcuCCAGcgCCGCGAggccgacaGCGUGCGCu -3' miRNA: 3'- cACucGGUCa-GGCGCUag------CGCGCGCG- -5' |
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26258 | 5' | -59.7 | NC_005345.2 | + | 8970 | 0.67 | 0.377612 |
Target: 5'- ---cGCCGG-CCuCGAUCGCagcuGCGCGCc -3' miRNA: 3'- cacuCGGUCaGGcGCUAGCG----CGCGCG- -5' |
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26258 | 5' | -59.7 | NC_005345.2 | + | 39900 | 0.68 | 0.369046 |
Target: 5'- uGUcGGCCGcaCCGUGGUCGCG-GCGUa -3' miRNA: 3'- -CAcUCGGUcaGGCGCUAGCGCgCGCG- -5' |
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26258 | 5' | -59.7 | NC_005345.2 | + | 19904 | 0.68 | 0.352317 |
Target: 5'- -cGAGCCg--CUGCGcAUCGCGgGCGa -3' miRNA: 3'- caCUCGGucaGGCGC-UAGCGCgCGCg -5' |
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26258 | 5' | -59.7 | NC_005345.2 | + | 38501 | 0.68 | 0.344157 |
Target: 5'- ----aCCGGUCCGCGGUCccugagucaCGCGUGCu -3' miRNA: 3'- cacucGGUCAGGCGCUAGc--------GCGCGCG- -5' |
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26258 | 5' | -59.7 | NC_005345.2 | + | 15973 | 0.69 | 0.320497 |
Target: 5'- ---uGCCAGUUgGCGAU-GUGCGCGg -3' miRNA: 3'- cacuCGGUCAGgCGCUAgCGCGCGCg -5' |
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26258 | 5' | -59.7 | NC_005345.2 | + | 42950 | 0.69 | 0.320497 |
Target: 5'- gGUG-GCCAGggcgCCGCGGaaCGCGCggaacuGCGCc -3' miRNA: 3'- -CACuCGGUCa---GGCGCUa-GCGCG------CGCG- -5' |
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26258 | 5' | -59.7 | NC_005345.2 | + | 23100 | 0.69 | 0.312886 |
Target: 5'- aUGAGuCCGGUCCccacggcagGCGAgCGCcgGUGCGCu -3' miRNA: 3'- cACUC-GGUCAGG---------CGCUaGCG--CGCGCG- -5' |
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26258 | 5' | -59.7 | NC_005345.2 | + | 17261 | 0.69 | 0.304673 |
Target: 5'- -cGGGCggCAGgcgCCGCGGUCcuggucuGCGCGCGg -3' miRNA: 3'- caCUCG--GUCa--GGCGCUAG-------CGCGCGCg -5' |
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26258 | 5' | -59.7 | NC_005345.2 | + | 34702 | 0.67 | 0.404101 |
Target: 5'- -cGAGCgAGUCgGCGAgCGagcagaGCGCGa -3' miRNA: 3'- caCUCGgUCAGgCGCUaGCg-----CGCGCg -5' |
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26258 | 5' | -59.7 | NC_005345.2 | + | 3341 | 0.67 | 0.4224 |
Target: 5'- -cGGGCUgcGGgcgCCGCguucGAUCGCGCGgaGCa -3' miRNA: 3'- caCUCGG--UCa--GGCG----CUAGCGCGCg-CG- -5' |
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26258 | 5' | -59.7 | NC_005345.2 | + | 23764 | 0.66 | 0.431734 |
Target: 5'- -cGAgGCCGG-CgGCGAUCGCGuCGaGCc -3' miRNA: 3'- caCU-CGGUCaGgCGCUAGCGC-GCgCG- -5' |
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26258 | 5' | -59.7 | NC_005345.2 | + | 43465 | 0.66 | 0.431734 |
Target: 5'- --cGGCgAGUUCGCGG-CGCaGCGCGg -3' miRNA: 3'- cacUCGgUCAGGCGCUaGCG-CGCGCg -5' |
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26258 | 5' | -59.7 | NC_005345.2 | + | 18665 | 0.66 | 0.431734 |
Target: 5'- aUGAcCCGGcgcaccaCCGCGAcgcagaUCGCGCGCaGCg -3' miRNA: 3'- cACUcGGUCa------GGCGCU------AGCGCGCG-CG- -5' |
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26258 | 5' | -59.7 | NC_005345.2 | + | 25810 | 0.68 | 0.369046 |
Target: 5'- -cGcAGCaCGGUCUGCGGgaUCGCauccuuguuccgGCGCGCc -3' miRNA: 3'- caC-UCG-GUCAGGCGCU--AGCG------------CGCGCG- -5' |
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26258 | 5' | -59.7 | NC_005345.2 | + | 21382 | 0.66 | 0.435501 |
Target: 5'- --aGGCCGGUgCGCGGgugacggggcagaGUGCGUGCa -3' miRNA: 3'- cacUCGGUCAgGCGCUag-----------CGCGCGCG- -5' |
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26258 | 5' | -59.7 | NC_005345.2 | + | 23306 | 0.71 | 0.220544 |
Target: 5'- --cGGCCguuguccucGGUCCGCG-UCGgGUGCGCg -3' miRNA: 3'- cacUCGG---------UCAGGCGCuAGCgCGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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