miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26258 5' -59.7 NC_005345.2 + 43951 0.66 0.441187
Target:  5'- -cGGGCCGG-CCGUGc-CGaUGCGUGCa -3'
miRNA:   3'- caCUCGGUCaGGCGCuaGC-GCGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 47885 0.68 0.344156
Target:  5'- cGUcGGCCGGcgugCUGUGGUCGUGC-CGCa -3'
miRNA:   3'- -CAcUCGGUCa---GGCGCUAGCGCGcGCG- -5'
26258 5' -59.7 NC_005345.2 + 28106 0.67 0.4224
Target:  5'- -cGAGgCGGUCgC-CGG-CGCGCGUGCc -3'
miRNA:   3'- caCUCgGUCAG-GcGCUaGCGCGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 36041 0.74 0.136851
Target:  5'- -cGGG-CAGUCCGgGAUCGCGaagaugcuCGCGCa -3'
miRNA:   3'- caCUCgGUCAGGCgCUAGCGC--------GCGCG- -5'
26258 5' -59.7 NC_005345.2 + 36379 0.66 0.441187
Target:  5'- -cGGGCgCGcUCCGCGGcCGCGgCGUGUg -3'
miRNA:   3'- caCUCG-GUcAGGCGCUaGCGC-GCGCG- -5'
26258 5' -59.7 NC_005345.2 + 10324 0.74 0.129603
Target:  5'- -cGAGCguGUUCGCGGUCGUGCagcuguccaGCGUg -3'
miRNA:   3'- caCUCGguCAGGCGCUAGCGCG---------CGCG- -5'
26258 5' -59.7 NC_005345.2 + 36218 0.78 0.076536
Target:  5'- gGUGGGCCAGUCCGCGAgccUGCuGCcgguuguucuGCGCc -3'
miRNA:   3'- -CACUCGGUCAGGCGCUa--GCG-CG----------CGCG- -5'
26258 5' -59.7 NC_005345.2 + 29693 0.68 0.360614
Target:  5'- ---cGCCGGcgaaCGCGAUCGCGCuGCuGCc -3'
miRNA:   3'- cacuCGGUCag--GCGCUAGCGCG-CG-CG- -5'
26258 5' -59.7 NC_005345.2 + 43866 0.66 0.441187
Target:  5'- cGUcGGCCGGgacUCCGCGG-CGgaGCGCGUc -3'
miRNA:   3'- -CAcUCGGUC---AGGCGCUaGCg-CGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 17261 0.69 0.304673
Target:  5'- -cGGGCggCAGgcgCCGCGGUCcuggucuGCGCGCGg -3'
miRNA:   3'- caCUCG--GUCa--GGCGCUAG-------CGCGCGCg -5'
26258 5' -59.7 NC_005345.2 + 23100 0.69 0.312886
Target:  5'- aUGAGuCCGGUCCccacggcagGCGAgCGCcgGUGCGCu -3'
miRNA:   3'- cACUC-GGUCAGG---------CGCUaGCG--CGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 34702 0.67 0.404101
Target:  5'- -cGAGCgAGUCgGCGAgCGagcagaGCGCGa -3'
miRNA:   3'- caCUCGgUCAGgCGCUaGCg-----CGCGCg -5'
26258 5' -59.7 NC_005345.2 + 3341 0.67 0.4224
Target:  5'- -cGGGCUgcGGgcgCCGCguucGAUCGCGCGgaGCa -3'
miRNA:   3'- caCUCGG--UCa--GGCG----CUAGCGCGCg-CG- -5'
26258 5' -59.7 NC_005345.2 + 23764 0.66 0.431734
Target:  5'- -cGAgGCCGG-CgGCGAUCGCGuCGaGCc -3'
miRNA:   3'- caCU-CGGUCaGgCGCUAGCGC-GCgCG- -5'
26258 5' -59.7 NC_005345.2 + 43465 0.66 0.431734
Target:  5'- --cGGCgAGUUCGCGG-CGCaGCGCGg -3'
miRNA:   3'- cacUCGgUCAGGCGCUaGCG-CGCGCg -5'
26258 5' -59.7 NC_005345.2 + 25810 0.68 0.369046
Target:  5'- -cGcAGCaCGGUCUGCGGgaUCGCauccuuguuccgGCGCGCc -3'
miRNA:   3'- caC-UCG-GUCAGGCGCU--AGCG------------CGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 19904 0.68 0.352317
Target:  5'- -cGAGCCg--CUGCGcAUCGCGgGCGa -3'
miRNA:   3'- caCUCGGucaGGCGC-UAGCGCgCGCg -5'
26258 5' -59.7 NC_005345.2 + 38501 0.68 0.344157
Target:  5'- ----aCCGGUCCGCGGUCccugagucaCGCGUGCu -3'
miRNA:   3'- cacucGGUCAGGCGCUAGc--------GCGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 15973 0.69 0.320497
Target:  5'- ---uGCCAGUUgGCGAU-GUGCGCGg -3'
miRNA:   3'- cacuCGGUCAGgCGCUAgCGCGCGCg -5'
26258 5' -59.7 NC_005345.2 + 42950 0.69 0.320497
Target:  5'- gGUG-GCCAGggcgCCGCGGaaCGCGCggaacuGCGCc -3'
miRNA:   3'- -CACuCGGUCa---GGCGCUa-GCGCG------CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.