miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26258 5' -59.7 NC_005345.2 + 18665 0.66 0.431734
Target:  5'- aUGAcCCGGcgcaccaCCGCGAcgcagaUCGCGCGCaGCg -3'
miRNA:   3'- cACUcGGUCa------GGCGCU------AGCGCGCG-CG- -5'
26258 5' -59.7 NC_005345.2 + 18858 0.67 0.4224
Target:  5'- -cGAGCaGGUgcgggCCGCGAUCGacaGCGCa- -3'
miRNA:   3'- caCUCGgUCA-----GGCGCUAGCg--CGCGcg -5'
26258 5' -59.7 NC_005345.2 + 19063 0.71 0.238155
Target:  5'- cGUGGucGCCuacggGGUCuaCGCGAUCGUGCGgGCc -3'
miRNA:   3'- -CACU--CGG-----UCAG--GCGCUAGCGCGCgCG- -5'
26258 5' -59.7 NC_005345.2 + 19445 0.66 0.470232
Target:  5'- -cGGGCuCGGgcagcagCGCGAUCGCGUuCGCc -3'
miRNA:   3'- caCUCG-GUCag-----GCGCUAGCGCGcGCG- -5'
26258 5' -59.7 NC_005345.2 + 19904 0.68 0.352317
Target:  5'- -cGAGCCg--CUGCGcAUCGCGgGCGa -3'
miRNA:   3'- caCUCGGucaGGCGC-UAGCGCgCGCg -5'
26258 5' -59.7 NC_005345.2 + 20871 0.66 0.46044
Target:  5'- -cGAGCUuGUCgacgagcuuCGCGAUCGCGuCGuCGUc -3'
miRNA:   3'- caCUCGGuCAG---------GCGCUAGCGC-GC-GCG- -5'
26258 5' -59.7 NC_005345.2 + 21382 0.66 0.435501
Target:  5'- --aGGCCGGUgCGCGGgugacggggcagaGUGCGUGCa -3'
miRNA:   3'- cacUCGGUCAgGCGCUag-----------CGCGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 21608 0.73 0.160881
Target:  5'- -cGAGCCGaugCCGCGGgugaucgcCGCGUGCGCc -3'
miRNA:   3'- caCUCGGUca-GGCGCUa-------GCGCGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 22054 0.69 0.320497
Target:  5'- -cGAGCCGa-CCGCGGUgGguccggcacacCGCGCGCa -3'
miRNA:   3'- caCUCGGUcaGGCGCUAgC-----------GCGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 23100 0.69 0.312886
Target:  5'- aUGAGuCCGGUCCccacggcagGCGAgCGCcgGUGCGCu -3'
miRNA:   3'- cACUC-GGUCAGG---------CGCUaGCG--CGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 23306 0.71 0.220544
Target:  5'- --cGGCCguuguccucGGUCCGCG-UCGgGUGCGCg -3'
miRNA:   3'- cacUCGG---------UCAGGCGCuAGCgCGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 23764 0.66 0.431734
Target:  5'- -cGAgGCCGG-CgGCGAUCGCGuCGaGCc -3'
miRNA:   3'- caCU-CGGUCaGgCGCUAGCGC-GCgCG- -5'
26258 5' -59.7 NC_005345.2 + 23992 0.68 0.328246
Target:  5'- -gGGGCaAGUCgccguucgucggCGCGAUCGCGCuCGCc -3'
miRNA:   3'- caCUCGgUCAG------------GCGCUAGCGCGcGCG- -5'
26258 5' -59.7 NC_005345.2 + 25450 0.71 0.20943
Target:  5'- -aGAGCCccGUaCCGC--UCGCGUGCGCu -3'
miRNA:   3'- caCUCGGu-CA-GGCGcuAGCGCGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 25810 0.68 0.369046
Target:  5'- -cGcAGCaCGGUCUGCGGgaUCGCauccuuguuccgGCGCGCc -3'
miRNA:   3'- caC-UCG-GUCAGGCGCU--AGCG------------CGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 26791 0.69 0.305413
Target:  5'- cGUG-GCCGGcgCCGCG-UCGCagGCGCuGCu -3'
miRNA:   3'- -CACuCGGUCa-GGCGCuAGCG--CGCG-CG- -5'
26258 5' -59.7 NC_005345.2 + 28106 0.67 0.4224
Target:  5'- -cGAGgCGGUCgC-CGG-CGCGCGUGCc -3'
miRNA:   3'- caCUCgGUCAG-GcGCUaGCGCGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 28955 0.73 0.174272
Target:  5'- -cGGGCCuuaUCCGCGAg-GCGCuGCGCg -3'
miRNA:   3'- caCUCGGuc-AGGCGCUagCGCG-CGCG- -5'
26258 5' -59.7 NC_005345.2 + 29693 0.68 0.360614
Target:  5'- ---cGCCGGcgaaCGCGAUCGCGCuGCuGCc -3'
miRNA:   3'- cacuCGGUCag--GCGCUAGCGCG-CG-CG- -5'
26258 5' -59.7 NC_005345.2 + 31234 0.78 0.074414
Target:  5'- gGUGuacGGCgGGUCCGgGGUCGgGUGCGCa -3'
miRNA:   3'- -CAC---UCGgUCAGGCgCUAGCgCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.