miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26258 5' -59.7 NC_005345.2 + 19063 0.71 0.238155
Target:  5'- cGUGGucGCCuacggGGUCuaCGCGAUCGUGCGgGCc -3'
miRNA:   3'- -CACU--CGG-----UCAG--GCGCUAGCGCGCgCG- -5'
26258 5' -59.7 NC_005345.2 + 9717 0.7 0.244281
Target:  5'- cGUGAGCCgcgccgcgcGGgCCGCGAcCGCGcCGaCGCu -3'
miRNA:   3'- -CACUCGG---------UCaGGCGCUaGCGC-GC-GCG- -5'
26258 5' -59.7 NC_005345.2 + 32838 0.7 0.244281
Target:  5'- aGUGGGCCgAGUUCgagGCGAUCGgGCuGcCGCa -3'
miRNA:   3'- -CACUCGG-UCAGG---CGCUAGCgCG-C-GCG- -5'
26258 5' -59.7 NC_005345.2 + 32222 0.7 0.256282
Target:  5'- -cGGGCUcGUCCGCGGUgacCGCGaccggggucaccaCGCGCa -3'
miRNA:   3'- caCUCGGuCAGGCGCUA---GCGC-------------GCGCG- -5'
26258 5' -59.7 NC_005345.2 + 37595 0.7 0.256927
Target:  5'- ---uGCCGGgcgaugaacUUCGCGGUCGUGCuGCGCa -3'
miRNA:   3'- cacuCGGUC---------AGGCGCUAGCGCG-CGCG- -5'
26258 5' -59.7 NC_005345.2 + 40295 0.7 0.256927
Target:  5'- cGUGGGCCAGUCCcuCGAaugcaucgucaUCGaCGaCGCGUu -3'
miRNA:   3'- -CACUCGGUCAGGc-GCU-----------AGC-GC-GCGCG- -5'
26258 5' -59.7 NC_005345.2 + 9877 0.7 0.263448
Target:  5'- -cGAG-CAGUCC-CGA-CGCGCcGCGCa -3'
miRNA:   3'- caCUCgGUCAGGcGCUaGCGCG-CGCG- -5'
26258 5' -59.7 NC_005345.2 + 18180 0.7 0.270103
Target:  5'- uGUGGGCguacaccGUCgGCGAg-GCGCGCGCc -3'
miRNA:   3'- -CACUCGgu-----CAGgCGCUagCGCGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 2181 0.7 0.270103
Target:  5'- cGUG-GCgGGUgcaaCGcCGAUgGCGCGCGCg -3'
miRNA:   3'- -CACuCGgUCAg---GC-GCUAgCGCGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 7577 0.7 0.270103
Target:  5'- -cGAGCacgcCCGCGAgcacggcgaGCGCGCGCa -3'
miRNA:   3'- caCUCGgucaGGCGCUag-------CGCGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 45505 0.7 0.270103
Target:  5'- -gGGGCCGcGUCCGCGAcacucuUCGCccgcuugcacuGCGCGa -3'
miRNA:   3'- caCUCGGU-CAGGCGCU------AGCG-----------CGCGCg -5'
26258 5' -59.7 NC_005345.2 + 34618 0.7 0.276892
Target:  5'- -gGAGCCAGcgugCgGCGGUCGgggcgGUGCGCu -3'
miRNA:   3'- caCUCGGUCa---GgCGCUAGCg----CGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 31642 0.69 0.290879
Target:  5'- aGUGGGCCGGacgCUGCGAguUCGUGacCGCGg -3'
miRNA:   3'- -CACUCGGUCa--GGCGCU--AGCGC--GCGCg -5'
26258 5' -59.7 NC_005345.2 + 8559 0.69 0.290879
Target:  5'- cGUGcucGCCGG-CUGCGAUCGUccauGCGgGCg -3'
miRNA:   3'- -CACu--CGGUCaGGCGCUAGCG----CGCgCG- -5'
26258 5' -59.7 NC_005345.2 + 35928 0.69 0.297351
Target:  5'- aGUGAcGCCGGggCGCGGggugugcUCGC-CGCGCg -3'
miRNA:   3'- -CACU-CGGUCagGCGCU-------AGCGcGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 17261 0.69 0.304673
Target:  5'- -cGGGCggCAGgcgCCGCGGUCcuggucuGCGCGCGg -3'
miRNA:   3'- caCUCG--GUCa--GGCGCUAG-------CGCGCGCg -5'
26258 5' -59.7 NC_005345.2 + 26791 0.69 0.305413
Target:  5'- cGUG-GCCGGcgCCGCG-UCGCagGCGCuGCu -3'
miRNA:   3'- -CACuCGGUCa-GGCGCuAGCG--CGCG-CG- -5'
26258 5' -59.7 NC_005345.2 + 23100 0.69 0.312886
Target:  5'- aUGAGuCCGGUCCccacggcagGCGAgCGCcgGUGCGCu -3'
miRNA:   3'- cACUC-GGUCAGG---------CGCUaGCG--CGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 42950 0.69 0.320497
Target:  5'- gGUG-GCCAGggcgCCGCGGaaCGCGCggaacuGCGCc -3'
miRNA:   3'- -CACuCGGUCa---GGCGCUa-GCGCG------CGCG- -5'
26258 5' -59.7 NC_005345.2 + 15973 0.69 0.320497
Target:  5'- ---uGCCAGUUgGCGAU-GUGCGCGg -3'
miRNA:   3'- cacuCGGUCAGgCGCUAgCGCGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.