miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26258 5' -59.7 NC_005345.2 + 28106 0.67 0.4224
Target:  5'- -cGAGgCGGUCgC-CGG-CGCGCGUGCc -3'
miRNA:   3'- caCUCgGUCAG-GcGCUaGCGCGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 33314 0.67 0.410449
Target:  5'- -cGAGCgGGcCCGCGcccaucuccacgcgGUCGCG-GCGUa -3'
miRNA:   3'- caCUCGgUCaGGCGC--------------UAGCGCgCGCG- -5'
26258 5' -59.7 NC_005345.2 + 34702 0.67 0.404101
Target:  5'- -cGAGCgAGUCgGCGAgCGagcagaGCGCGa -3'
miRNA:   3'- caCUCGgUCAGgCGCUaGCg-----CGCGCg -5'
26258 5' -59.7 NC_005345.2 + 8031 0.67 0.404101
Target:  5'- -gGAGCCccGUaCCGCGggCGUGCuGCGg -3'
miRNA:   3'- caCUCGGu-CA-GGCGCuaGCGCG-CGCg -5'
26258 5' -59.7 NC_005345.2 + 47959 0.67 0.404101
Target:  5'- -cGGGCCGGaCUGcCGAgccgccCGUGUGCGCc -3'
miRNA:   3'- caCUCGGUCaGGC-GCUa-----GCGCGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 42015 0.67 0.395142
Target:  5'- -cGGGCCAcGUgccCCGCccgguUCGCGCgGCGCc -3'
miRNA:   3'- caCUCGGU-CA---GGCGcu---AGCGCG-CGCG- -5'
26258 5' -59.7 NC_005345.2 + 39416 0.67 0.386311
Target:  5'- -gGAGC--GUCggCGCGGUCGCGgccCGCGCg -3'
miRNA:   3'- caCUCGguCAG--GCGCUAGCGC---GCGCG- -5'
26258 5' -59.7 NC_005345.2 + 37639 0.67 0.386311
Target:  5'- cGUGAGCggcugCAGUCCgGCG-UCGgUGCGgGCc -3'
miRNA:   3'- -CACUCG-----GUCAGG-CGCuAGC-GCGCgCG- -5'
26258 5' -59.7 NC_005345.2 + 2823 0.67 0.377612
Target:  5'- cUGcuCCAGcgCCGCGAggccgacaGCGUGCGCu -3'
miRNA:   3'- cACucGGUCa-GGCGCUag------CGCGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 8970 0.67 0.377612
Target:  5'- ---cGCCGG-CCuCGAUCGCagcuGCGCGCc -3'
miRNA:   3'- cacuCGGUCaGGcGCUAGCG----CGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 38710 0.67 0.377612
Target:  5'- gGUGAGCUgcgcaacgCgGUGGUUGuCGCGCGCg -3'
miRNA:   3'- -CACUCGGuca-----GgCGCUAGC-GCGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 39900 0.68 0.369046
Target:  5'- uGUcGGCCGcaCCGUGGUCGCG-GCGUa -3'
miRNA:   3'- -CAcUCGGUcaGGCGCUAGCGCgCGCG- -5'
26258 5' -59.7 NC_005345.2 + 25810 0.68 0.369046
Target:  5'- -cGcAGCaCGGUCUGCGGgaUCGCauccuuguuccgGCGCGCc -3'
miRNA:   3'- caC-UCG-GUCAGGCGCU--AGCG------------CGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 29693 0.68 0.360614
Target:  5'- ---cGCCGGcgaaCGCGAUCGCGCuGCuGCc -3'
miRNA:   3'- cacuCGGUCag--GCGCUAGCGCG-CG-CG- -5'
26258 5' -59.7 NC_005345.2 + 19904 0.68 0.352317
Target:  5'- -cGAGCCg--CUGCGcAUCGCGgGCGa -3'
miRNA:   3'- caCUCGGucaGGCGC-UAGCGCgCGCg -5'
26258 5' -59.7 NC_005345.2 + 38501 0.68 0.344157
Target:  5'- ----aCCGGUCCGCGGUCccugagucaCGCGUGCu -3'
miRNA:   3'- cacucGGUCAGGCGCUAGc--------GCGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 47885 0.68 0.344156
Target:  5'- cGUcGGCCGGcgugCUGUGGUCGUGC-CGCa -3'
miRNA:   3'- -CAcUCGGUCa---GGCGCUAGCGCGcGCG- -5'
26258 5' -59.7 NC_005345.2 + 23992 0.68 0.328246
Target:  5'- -gGGGCaAGUCgccguucgucggCGCGAUCGCGCuCGCc -3'
miRNA:   3'- caCUCGgUCAG------------GCGCUAGCGCGcGCG- -5'
26258 5' -59.7 NC_005345.2 + 42950 0.69 0.320497
Target:  5'- gGUG-GCCAGggcgCCGCGGaaCGCGCggaacuGCGCc -3'
miRNA:   3'- -CACuCGGUCa---GGCGCUa-GCGCG------CGCG- -5'
26258 5' -59.7 NC_005345.2 + 15973 0.69 0.320497
Target:  5'- ---uGCCAGUUgGCGAU-GUGCGCGg -3'
miRNA:   3'- cacuCGGUCAGgCGCUAgCGCGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.