miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26258 5' -59.7 NC_005345.2 + 46943 1.1 0.000298
Target:  5'- gGUGAGCCAGUCCGCGAUCGCGCGCGCc -3'
miRNA:   3'- -CACUCGGUCAGGCGCUAGCGCGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 31234 0.78 0.074414
Target:  5'- gGUGuacGGCgGGUCCGgGGUCGgGUGCGCa -3'
miRNA:   3'- -CAC---UCGgUCAGGCgCUAGCgCGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 36218 0.78 0.076536
Target:  5'- gGUGGGCCAGUCCGCGAgccUGCuGCcgguuguucuGCGCc -3'
miRNA:   3'- -CACUCGGUCAGGCGCUa--GCG-CG----------CGCG- -5'
26258 5' -59.7 NC_005345.2 + 37699 0.77 0.088044
Target:  5'- cGUGGGCCgccAGUCCuGCGGgaUCGCGCugcgGCGCg -3'
miRNA:   3'- -CACUCGG---UCAGG-CGCU--AGCGCG----CGCG- -5'
26258 5' -59.7 NC_005345.2 + 45407 0.76 0.101185
Target:  5'- -gGAGCCAGUCCGacaGGcgGCGCGgGCg -3'
miRNA:   3'- caCUCGGUCAGGCg--CUagCGCGCgCG- -5'
26258 5' -59.7 NC_005345.2 + 38356 0.76 0.106944
Target:  5'- -cGAGCCGGUCCGCcugcCGCaGCGCGg -3'
miRNA:   3'- caCUCGGUCAGGCGcua-GCG-CGCGCg -5'
26258 5' -59.7 NC_005345.2 + 10324 0.74 0.129603
Target:  5'- -cGAGCguGUUCGCGGUCGUGCagcuguccaGCGUg -3'
miRNA:   3'- caCUCGguCAGGCGCUAGCGCG---------CGCG- -5'
26258 5' -59.7 NC_005345.2 + 31812 0.74 0.136851
Target:  5'- -cGGGUCggGGUCCGgGAUgCGUGCGUGCa -3'
miRNA:   3'- caCUCGG--UCAGGCgCUA-GCGCGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 36041 0.74 0.136851
Target:  5'- -cGGG-CAGUCCGgGAUCGCGaagaugcuCGCGCa -3'
miRNA:   3'- caCUCgGUCAGGCgCUAGCGC--------GCGCG- -5'
26258 5' -59.7 NC_005345.2 + 21608 0.73 0.160881
Target:  5'- -cGAGCCGaugCCGCGGgugaucgcCGCGUGCGCc -3'
miRNA:   3'- caCUCGGUca-GGCGCUa-------GCGCGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 40773 0.73 0.160881
Target:  5'- -cGGGCCGGUCgGCcggCGCGgGCGUg -3'
miRNA:   3'- caCUCGGUCAGgCGcuaGCGCgCGCG- -5'
26258 5' -59.7 NC_005345.2 + 28955 0.73 0.174272
Target:  5'- -cGGGCCuuaUCCGCGAg-GCGCuGCGCg -3'
miRNA:   3'- caCUCGGuc-AGGCGCUagCGCG-CGCG- -5'
26258 5' -59.7 NC_005345.2 + 46522 0.72 0.19316
Target:  5'- --cGGUCAGUCCGCGccgcuccAUCGCGCuGCGg -3'
miRNA:   3'- cacUCGGUCAGGCGC-------UAGCGCG-CGCg -5'
26258 5' -59.7 NC_005345.2 + 34522 0.72 0.193667
Target:  5'- -cGAGgCGGgCCGCGGccUCGCGgGCGUa -3'
miRNA:   3'- caCUCgGUCaGGCGCU--AGCGCgCGCG- -5'
26258 5' -59.7 NC_005345.2 + 25450 0.71 0.20943
Target:  5'- -aGAGCCccGUaCCGC--UCGCGUGCGCu -3'
miRNA:   3'- caCUCGGu-CA-GGCGcuAGCGCGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 23306 0.71 0.220544
Target:  5'- --cGGCCguuguccucGGUCCGCG-UCGgGUGCGCg -3'
miRNA:   3'- cacUCGG---------UCAGGCGCuAGCgCGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 5769 0.71 0.226288
Target:  5'- -cGAGgCGGUCCGCaGGUCGgCGUaCGCg -3'
miRNA:   3'- caCUCgGUCAGGCG-CUAGC-GCGcGCG- -5'
26258 5' -59.7 NC_005345.2 + 39562 0.71 0.232157
Target:  5'- --cGGCCGGUCCcggcCGGUCGUGCGUucGCa -3'
miRNA:   3'- cacUCGGUCAGGc---GCUAGCGCGCG--CG- -5'
26258 5' -59.7 NC_005345.2 + 1142 0.71 0.235741
Target:  5'- -gGAGCCuGggacaccaccgcgCCGCGAggggaGCGUGCGCg -3'
miRNA:   3'- caCUCGGuCa------------GGCGCUag---CGCGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 41855 0.71 0.236342
Target:  5'- --cGGCUcGUCCugcgguucgccucgGCGAUCGCGCGgGCg -3'
miRNA:   3'- cacUCGGuCAGG--------------CGCUAGCGCGCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.