miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26258 5' -59.7 NC_005345.2 + 36218 0.78 0.076536
Target:  5'- gGUGGGCCAGUCCGCGAgccUGCuGCcgguuguucuGCGCc -3'
miRNA:   3'- -CACUCGGUCAGGCGCUa--GCG-CG----------CGCG- -5'
26258 5' -59.7 NC_005345.2 + 47885 0.68 0.344156
Target:  5'- cGUcGGCCGGcgugCUGUGGUCGUGC-CGCa -3'
miRNA:   3'- -CAcUCGGUCa---GGCGCUAGCGCGcGCG- -5'
26258 5' -59.7 NC_005345.2 + 47959 0.67 0.404101
Target:  5'- -cGGGCCGGaCUGcCGAgccgccCGUGUGCGCc -3'
miRNA:   3'- caCUCGGUCaGGC-GCUa-----GCGCGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 43951 0.66 0.441187
Target:  5'- -cGGGCCGG-CCGUGc-CGaUGCGUGCa -3'
miRNA:   3'- caCUCGGUCaGGCGCuaGC-GCGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 39562 0.71 0.232157
Target:  5'- --cGGCCGGUCCcggcCGGUCGUGCGUucGCa -3'
miRNA:   3'- cacUCGGUCAGGc---GCUAGCGCGCG--CG- -5'
26258 5' -59.7 NC_005345.2 + 41855 0.71 0.236342
Target:  5'- --cGGCUcGUCCugcgguucgccucgGCGAUCGCGCGgGCg -3'
miRNA:   3'- cacUCGGuCAGG--------------CGCUAGCGCGCgCG- -5'
26258 5' -59.7 NC_005345.2 + 32838 0.7 0.244281
Target:  5'- aGUGGGCCgAGUUCgagGCGAUCGgGCuGcCGCa -3'
miRNA:   3'- -CACUCGG-UCAGG---CGCUAGCgCG-C-GCG- -5'
26258 5' -59.7 NC_005345.2 + 9717 0.7 0.244281
Target:  5'- cGUGAGCCgcgccgcgcGGgCCGCGAcCGCGcCGaCGCu -3'
miRNA:   3'- -CACUCGG---------UCaGGCGCUaGCGC-GC-GCG- -5'
26258 5' -59.7 NC_005345.2 + 18180 0.7 0.270103
Target:  5'- uGUGGGCguacaccGUCgGCGAg-GCGCGCGCc -3'
miRNA:   3'- -CACUCGgu-----CAGgCGCUagCGCGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 23992 0.68 0.328246
Target:  5'- -gGGGCaAGUCgccguucgucggCGCGAUCGCGCuCGCc -3'
miRNA:   3'- caCUCGgUCAG------------GCGCUAGCGCGcGCG- -5'
26258 5' -59.7 NC_005345.2 + 7577 0.7 0.270103
Target:  5'- -cGAGCacgcCCGCGAgcacggcgaGCGCGCGCa -3'
miRNA:   3'- caCUCGgucaGGCGCUag-------CGCGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 40295 0.7 0.256927
Target:  5'- cGUGGGCCAGUCCcuCGAaugcaucgucaUCGaCGaCGCGUu -3'
miRNA:   3'- -CACUCGGUCAGGc-GCU-----------AGC-GC-GCGCG- -5'
26258 5' -59.7 NC_005345.2 + 10324 0.74 0.129603
Target:  5'- -cGAGCguGUUCGCGGUCGUGCagcuguccaGCGUg -3'
miRNA:   3'- caCUCGguCAGGCGCUAGCGCG---------CGCG- -5'
26258 5' -59.7 NC_005345.2 + 26791 0.69 0.305413
Target:  5'- cGUG-GCCGGcgCCGCG-UCGCagGCGCuGCu -3'
miRNA:   3'- -CACuCGGUCa-GGCGCuAGCG--CGCG-CG- -5'
26258 5' -59.7 NC_005345.2 + 36041 0.74 0.136851
Target:  5'- -cGGG-CAGUCCGgGAUCGCGaagaugcuCGCGCa -3'
miRNA:   3'- caCUCgGUCAGGCgCUAGCGC--------GCGCG- -5'
26258 5' -59.7 NC_005345.2 + 32222 0.7 0.256282
Target:  5'- -cGGGCUcGUCCGCGGUgacCGCGaccggggucaccaCGCGCa -3'
miRNA:   3'- caCUCGGuCAGGCGCUA---GCGC-------------GCGCG- -5'
26258 5' -59.7 NC_005345.2 + 22054 0.69 0.320497
Target:  5'- -cGAGCCGa-CCGCGGUgGguccggcacacCGCGCGCa -3'
miRNA:   3'- caCUCGGUcaGGCGCUAgC-----------GCGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 29693 0.68 0.360614
Target:  5'- ---cGCCGGcgaaCGCGAUCGCGCuGCuGCc -3'
miRNA:   3'- cacuCGGUCag--GCGCUAGCGCG-CG-CG- -5'
26258 5' -59.7 NC_005345.2 + 28955 0.73 0.174272
Target:  5'- -cGGGCCuuaUCCGCGAg-GCGCuGCGCg -3'
miRNA:   3'- caCUCGGuc-AGGCGCUagCGCG-CGCG- -5'
26258 5' -59.7 NC_005345.2 + 19063 0.71 0.238155
Target:  5'- cGUGGucGCCuacggGGUCuaCGCGAUCGUGCGgGCc -3'
miRNA:   3'- -CACU--CGG-----UCAG--GCGCUAGCGCGCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.