miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26258 5' -59.7 NC_005345.2 + 2823 0.67 0.377612
Target:  5'- cUGcuCCAGcgCCGCGAggccgacaGCGUGCGCu -3'
miRNA:   3'- cACucGGUCa-GGCGCUag------CGCGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 23764 0.66 0.431734
Target:  5'- -cGAgGCCGG-CgGCGAUCGCGuCGaGCc -3'
miRNA:   3'- caCU-CGGUCaGgCGCUAGCGC-GCgCG- -5'
26258 5' -59.7 NC_005345.2 + 3341 0.67 0.4224
Target:  5'- -cGGGCUgcGGgcgCCGCguucGAUCGCGCGgaGCa -3'
miRNA:   3'- caCUCGG--UCa--GGCG----CUAGCGCGCg-CG- -5'
26258 5' -59.7 NC_005345.2 + 34702 0.67 0.404101
Target:  5'- -cGAGCgAGUCgGCGAgCGagcagaGCGCGa -3'
miRNA:   3'- caCUCGgUCAGgCGCUaGCg-----CGCGCg -5'
26258 5' -59.7 NC_005345.2 + 8031 0.67 0.404101
Target:  5'- -gGAGCCccGUaCCGCGggCGUGCuGCGg -3'
miRNA:   3'- caCUCGGu-CA-GGCGCuaGCGCG-CGCg -5'
26258 5' -59.7 NC_005345.2 + 42015 0.67 0.395142
Target:  5'- -cGGGCCAcGUgccCCGCccgguUCGCGCgGCGCc -3'
miRNA:   3'- caCUCGGU-CA---GGCGcu---AGCGCG-CGCG- -5'
26258 5' -59.7 NC_005345.2 + 37639 0.67 0.386311
Target:  5'- cGUGAGCggcugCAGUCCgGCG-UCGgUGCGgGCc -3'
miRNA:   3'- -CACUCG-----GUCAGG-CGCuAGC-GCGCgCG- -5'
26258 5' -59.7 NC_005345.2 + 39416 0.67 0.386311
Target:  5'- -gGAGC--GUCggCGCGGUCGCGgccCGCGCg -3'
miRNA:   3'- caCUCGguCAG--GCGCUAGCGC---GCGCG- -5'
26258 5' -59.7 NC_005345.2 + 38710 0.67 0.377612
Target:  5'- gGUGAGCUgcgcaacgCgGUGGUUGuCGCGCGCg -3'
miRNA:   3'- -CACUCGGuca-----GgCGCUAGC-GCGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 43465 0.66 0.431734
Target:  5'- --cGGCgAGUUCGCGG-CGCaGCGCGg -3'
miRNA:   3'- cacUCGgUCAGGCGCUaGCG-CGCGCg -5'
26258 5' -59.7 NC_005345.2 + 18665 0.66 0.431734
Target:  5'- aUGAcCCGGcgcaccaCCGCGAcgcagaUCGCGCGCaGCg -3'
miRNA:   3'- cACUcGGUCa------GGCGCU------AGCGCGCG-CG- -5'
26258 5' -59.7 NC_005345.2 + 21382 0.66 0.435501
Target:  5'- --aGGCCGGUgCGCGGgugacggggcagaGUGCGUGCa -3'
miRNA:   3'- cacUCGGUCAgGCGCUag-----------CGCGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 34793 0.66 0.46044
Target:  5'- cUGcGCCGGgUCGCGGuccUCGCGCaCGCc -3'
miRNA:   3'- cACuCGGUCaGGCGCU---AGCGCGcGCG- -5'
26258 5' -59.7 NC_005345.2 + 20871 0.66 0.46044
Target:  5'- -cGAGCUuGUCgacgagcuuCGCGAUCGCGuCGuCGUc -3'
miRNA:   3'- caCUCGGuCAG---------GCGCUAGCGC-GC-GCG- -5'
26258 5' -59.7 NC_005345.2 + 6359 0.66 0.46044
Target:  5'- -cGGcGCCGGguuggCCGCGGUgGCGuUGCGg -3'
miRNA:   3'- caCU-CGGUCa----GGCGCUAgCGC-GCGCg -5'
26258 5' -59.7 NC_005345.2 + 41532 0.66 0.457523
Target:  5'- -cGAGCgucUCgGCGAccuggucgacgacgUCGUGCGCGCg -3'
miRNA:   3'- caCUCGgucAGgCGCU--------------AGCGCGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 48272 0.66 0.450757
Target:  5'- cUGAuGCCGcccGaCCGCGcgCaGUGCGCGCu -3'
miRNA:   3'- cACU-CGGU---CaGGCGCuaG-CGCGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 43866 0.66 0.441187
Target:  5'- cGUcGGCCGGgacUCCGCGG-CGgaGCGCGUc -3'
miRNA:   3'- -CAcUCGGUC---AGGCGCUaGCg-CGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 7522 0.66 0.441187
Target:  5'- cGUGcuGCCGG-CgGCGGUCGUG-GUGCu -3'
miRNA:   3'- -CACu-CGGUCaGgCGCUAGCGCgCGCG- -5'
26258 5' -59.7 NC_005345.2 + 37506 0.66 0.441187
Target:  5'- -cGGGCgCGGgCUGCGG-CGCGgUGCGCu -3'
miRNA:   3'- caCUCG-GUCaGGCGCUaGCGC-GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.