miRNA display CGI


Results 1 - 20 of 79 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26258 5' -59.7 NC_005345.2 + 1142 0.71 0.235741
Target:  5'- -gGAGCCuGggacaccaccgcgCCGCGAggggaGCGUGCGCg -3'
miRNA:   3'- caCUCGGuCa------------GGCGCUag---CGCGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 2181 0.7 0.270103
Target:  5'- cGUG-GCgGGUgcaaCGcCGAUgGCGCGCGCg -3'
miRNA:   3'- -CACuCGgUCAg---GC-GCUAgCGCGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 2823 0.67 0.377612
Target:  5'- cUGcuCCAGcgCCGCGAggccgacaGCGUGCGCu -3'
miRNA:   3'- cACucGGUCa-GGCGCUag------CGCGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 3341 0.67 0.4224
Target:  5'- -cGGGCUgcGGgcgCCGCguucGAUCGCGCGgaGCa -3'
miRNA:   3'- caCUCGG--UCa--GGCG----CUAGCGCGCg-CG- -5'
26258 5' -59.7 NC_005345.2 + 5769 0.71 0.226288
Target:  5'- -cGAGgCGGUCCGCaGGUCGgCGUaCGCg -3'
miRNA:   3'- caCUCgGUCAGGCG-CUAGC-GCGcGCG- -5'
26258 5' -59.7 NC_005345.2 + 6359 0.66 0.46044
Target:  5'- -cGGcGCCGGguuggCCGCGGUgGCGuUGCGg -3'
miRNA:   3'- caCU-CGGUCa----GGCGCUAgCGC-GCGCg -5'
26258 5' -59.7 NC_005345.2 + 7522 0.66 0.441187
Target:  5'- cGUGcuGCCGG-CgGCGGUCGUG-GUGCu -3'
miRNA:   3'- -CACu-CGGUCaGgCGCUAGCGCgCGCG- -5'
26258 5' -59.7 NC_005345.2 + 7577 0.7 0.270103
Target:  5'- -cGAGCacgcCCGCGAgcacggcgaGCGCGCGCa -3'
miRNA:   3'- caCUCGgucaGGCGCUag-------CGCGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 8031 0.67 0.404101
Target:  5'- -gGAGCCccGUaCCGCGggCGUGCuGCGg -3'
miRNA:   3'- caCUCGGu-CA-GGCGCuaGCGCG-CGCg -5'
26258 5' -59.7 NC_005345.2 + 8559 0.69 0.290879
Target:  5'- cGUGcucGCCGG-CUGCGAUCGUccauGCGgGCg -3'
miRNA:   3'- -CACu--CGGUCaGGCGCUAGCG----CGCgCG- -5'
26258 5' -59.7 NC_005345.2 + 8970 0.67 0.377612
Target:  5'- ---cGCCGG-CCuCGAUCGCagcuGCGCGCc -3'
miRNA:   3'- cacuCGGUCaGGcGCUAGCG----CGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 9499 0.66 0.431734
Target:  5'- -cGAGUggCAGU-CGCGGgcccUGUGCGCGCa -3'
miRNA:   3'- caCUCG--GUCAgGCGCUa---GCGCGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 9717 0.7 0.244281
Target:  5'- cGUGAGCCgcgccgcgcGGgCCGCGAcCGCGcCGaCGCu -3'
miRNA:   3'- -CACUCGG---------UCaGGCGCUaGCGC-GC-GCG- -5'
26258 5' -59.7 NC_005345.2 + 9877 0.7 0.263448
Target:  5'- -cGAG-CAGUCC-CGA-CGCGCcGCGCa -3'
miRNA:   3'- caCUCgGUCAGGcGCUaGCGCG-CGCG- -5'
26258 5' -59.7 NC_005345.2 + 10324 0.74 0.129603
Target:  5'- -cGAGCguGUUCGCGGUCGUGCagcuguccaGCGUg -3'
miRNA:   3'- caCUCGguCAGGCGCUAGCGCG---------CGCG- -5'
26258 5' -59.7 NC_005345.2 + 10412 0.67 0.4224
Target:  5'- cGUGAcGCU-GUgCGaGGUCGCGCGCGa -3'
miRNA:   3'- -CACU-CGGuCAgGCgCUAGCGCGCGCg -5'
26258 5' -59.7 NC_005345.2 + 12414 0.66 0.441187
Target:  5'- -cGAGUCGG-CCGaUGAcgucgaggcgcgUCGCGCGgGCu -3'
miRNA:   3'- caCUCGGUCaGGC-GCU------------AGCGCGCgCG- -5'
26258 5' -59.7 NC_005345.2 + 15973 0.69 0.320497
Target:  5'- ---uGCCAGUUgGCGAU-GUGCGCGg -3'
miRNA:   3'- cacuCGGUCAGgCGCUAgCGCGCGCg -5'
26258 5' -59.7 NC_005345.2 + 17261 0.69 0.304673
Target:  5'- -cGGGCggCAGgcgCCGCGGUCcuggucuGCGCGCGg -3'
miRNA:   3'- caCUCG--GUCa--GGCGCUAG-------CGCGCGCg -5'
26258 5' -59.7 NC_005345.2 + 18180 0.7 0.270103
Target:  5'- uGUGGGCguacaccGUCgGCGAg-GCGCGCGCc -3'
miRNA:   3'- -CACUCGgu-----CAGgCGCUagCGCGCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.