miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26258 5' -59.7 NC_005345.2 + 48272 0.66 0.450757
Target:  5'- cUGAuGCCGcccGaCCGCGcgCaGUGCGCGCu -3'
miRNA:   3'- cACU-CGGU---CaGGCGCuaG-CGCGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 47959 0.67 0.404101
Target:  5'- -cGGGCCGGaCUGcCGAgccgccCGUGUGCGCc -3'
miRNA:   3'- caCUCGGUCaGGC-GCUa-----GCGCGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 47885 0.68 0.344156
Target:  5'- cGUcGGCCGGcgugCUGUGGUCGUGC-CGCa -3'
miRNA:   3'- -CAcUCGGUCa---GGCGCUAGCGCGcGCG- -5'
26258 5' -59.7 NC_005345.2 + 46943 1.1 0.000298
Target:  5'- gGUGAGCCAGUCCGCGAUCGCGCGCGCc -3'
miRNA:   3'- -CACUCGGUCAGGCGCUAGCGCGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 46522 0.72 0.19316
Target:  5'- --cGGUCAGUCCGCGccgcuccAUCGCGCuGCGg -3'
miRNA:   3'- cacUCGGUCAGGCGC-------UAGCGCG-CGCg -5'
26258 5' -59.7 NC_005345.2 + 45505 0.7 0.270103
Target:  5'- -gGGGCCGcGUCCGCGAcacucuUCGCccgcuugcacuGCGCGa -3'
miRNA:   3'- caCUCGGU-CAGGCGCU------AGCG-----------CGCGCg -5'
26258 5' -59.7 NC_005345.2 + 45407 0.76 0.101185
Target:  5'- -gGAGCCAGUCCGacaGGcgGCGCGgGCg -3'
miRNA:   3'- caCUCGGUCAGGCg--CUagCGCGCgCG- -5'
26258 5' -59.7 NC_005345.2 + 43951 0.66 0.441187
Target:  5'- -cGGGCCGG-CCGUGc-CGaUGCGUGCa -3'
miRNA:   3'- caCUCGGUCaGGCGCuaGC-GCGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 43866 0.66 0.441187
Target:  5'- cGUcGGCCGGgacUCCGCGG-CGgaGCGCGUc -3'
miRNA:   3'- -CAcUCGGUC---AGGCGCUaGCg-CGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 43465 0.66 0.431734
Target:  5'- --cGGCgAGUUCGCGG-CGCaGCGCGg -3'
miRNA:   3'- cacUCGgUCAGGCGCUaGCG-CGCGCg -5'
26258 5' -59.7 NC_005345.2 + 42950 0.69 0.320497
Target:  5'- gGUG-GCCAGggcgCCGCGGaaCGCGCggaacuGCGCc -3'
miRNA:   3'- -CACuCGGUCa---GGCGCUa-GCGCG------CGCG- -5'
26258 5' -59.7 NC_005345.2 + 42015 0.67 0.395142
Target:  5'- -cGGGCCAcGUgccCCGCccgguUCGCGCgGCGCc -3'
miRNA:   3'- caCUCGGU-CA---GGCGcu---AGCGCG-CGCG- -5'
26258 5' -59.7 NC_005345.2 + 41855 0.71 0.236342
Target:  5'- --cGGCUcGUCCugcgguucgccucgGCGAUCGCGCGgGCg -3'
miRNA:   3'- cacUCGGuCAGG--------------CGCUAGCGCGCgCG- -5'
26258 5' -59.7 NC_005345.2 + 41532 0.66 0.457523
Target:  5'- -cGAGCgucUCgGCGAccuggucgacgacgUCGUGCGCGCg -3'
miRNA:   3'- caCUCGgucAGgCGCU--------------AGCGCGCGCG- -5'
26258 5' -59.7 NC_005345.2 + 40773 0.73 0.160881
Target:  5'- -cGGGCCGGUCgGCcggCGCGgGCGUg -3'
miRNA:   3'- caCUCGGUCAGgCGcuaGCGCgCGCG- -5'
26258 5' -59.7 NC_005345.2 + 40295 0.7 0.256927
Target:  5'- cGUGGGCCAGUCCcuCGAaugcaucgucaUCGaCGaCGCGUu -3'
miRNA:   3'- -CACUCGGUCAGGc-GCU-----------AGC-GC-GCGCG- -5'
26258 5' -59.7 NC_005345.2 + 39900 0.68 0.369046
Target:  5'- uGUcGGCCGcaCCGUGGUCGCG-GCGUa -3'
miRNA:   3'- -CAcUCGGUcaGGCGCUAGCGCgCGCG- -5'
26258 5' -59.7 NC_005345.2 + 39562 0.71 0.232157
Target:  5'- --cGGCCGGUCCcggcCGGUCGUGCGUucGCa -3'
miRNA:   3'- cacUCGGUCAGGc---GCUAGCGCGCG--CG- -5'
26258 5' -59.7 NC_005345.2 + 39416 0.67 0.386311
Target:  5'- -gGAGC--GUCggCGCGGUCGCGgccCGCGCg -3'
miRNA:   3'- caCUCGguCAG--GCGCUAGCGC---GCGCG- -5'
26258 5' -59.7 NC_005345.2 + 38710 0.67 0.377612
Target:  5'- gGUGAGCUgcgcaacgCgGUGGUUGuCGCGCGCg -3'
miRNA:   3'- -CACUCGGuca-----GgCGCUAGC-GCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.