miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2626 5' -58.5 NC_001491.2 + 32187 0.66 0.816378
Target:  5'- --gAGGaCGAccaGGCG-GAUGGuGCCGGGGc -3'
miRNA:   3'- guaUCC-GUU---UCGCgCUGCC-CGGCCCU- -5'
2626 5' -58.5 NC_001491.2 + 2924 0.66 0.816378
Target:  5'- --cGGGCAucGCcuccugGCuGAggUGGGCCGGGGa -3'
miRNA:   3'- guaUCCGUuuCG------CG-CU--GCCCGGCCCU- -5'
2626 5' -58.5 NC_001491.2 + 99045 0.66 0.807758
Target:  5'- aCAUAGGCcaaaauuAGCGCGGCGcGGUCugcgcgauGGAg -3'
miRNA:   3'- -GUAUCCGuu-----UCGCGCUGC-CCGGc-------CCU- -5'
2626 5' -58.5 NC_001491.2 + 69696 0.66 0.798983
Target:  5'- ---uGGCGGuucccgcguccGGCGCGGCGGuugccaGCaCGGGAg -3'
miRNA:   3'- guauCCGUU-----------UCGCGCUGCC------CG-GCCCU- -5'
2626 5' -58.5 NC_001491.2 + 22384 0.66 0.798983
Target:  5'- ---cGGguGGGCGUu-CGGGCUGGGu -3'
miRNA:   3'- guauCCguUUCGCGcuGCCCGGCCCu -5'
2626 5' -58.5 NC_001491.2 + 44154 0.66 0.798983
Target:  5'- ---cGGCGAaggacagacccAGCGCGGCGGcaGCCGcGGc -3'
miRNA:   3'- guauCCGUU-----------UCGCGCUGCC--CGGC-CCu -5'
2626 5' -58.5 NC_001491.2 + 28832 0.66 0.798983
Target:  5'- -cUGGGcCGGGGuCGCcggagcugGGCuGGGCCGGGGu -3'
miRNA:   3'- guAUCC-GUUUC-GCG--------CUG-CCCGGCCCU- -5'
2626 5' -58.5 NC_001491.2 + 105863 0.66 0.780087
Target:  5'- --gGGGCAGAGgGgGAgCGGGUggaagagUGGGAg -3'
miRNA:   3'- guaUCCGUUUCgCgCU-GCCCG-------GCCCU- -5'
2626 5' -58.5 NC_001491.2 + 105800 0.66 0.780087
Target:  5'- --gGGGCAGAGgGgGAgCGGGUggaagagUGGGAg -3'
miRNA:   3'- guaUCCGUUUCgCgCU-GCCCG-------GCCCU- -5'
2626 5' -58.5 NC_001491.2 + 105738 0.66 0.780087
Target:  5'- --gGGGCAGAGgGgGAgCGGGUggaagagUGGGAg -3'
miRNA:   3'- guaUCCGUUUCgCgCU-GCCCG-------GCCCU- -5'
2626 5' -58.5 NC_001491.2 + 105675 0.66 0.780087
Target:  5'- --gGGGCAGAGgGgGAgCGGGUggaagagUGGGAg -3'
miRNA:   3'- guaUCCGUUUCgCgCU-GCCCG-------GCCCU- -5'
2626 5' -58.5 NC_001491.2 + 11943 0.67 0.770884
Target:  5'- ---cGGCAccucgcuGGGUGCGACGGGgaaguagccCUGGGGa -3'
miRNA:   3'- guauCCGU-------UUCGCGCUGCCC---------GGCCCU- -5'
2626 5' -58.5 NC_001491.2 + 3835 0.67 0.743547
Target:  5'- ---cGGCA--GCgGCGGCcuGGGCCGGGu -3'
miRNA:   3'- guauCCGUuuCG-CGCUG--CCCGGCCCu -5'
2626 5' -58.5 NC_001491.2 + 52682 0.67 0.733924
Target:  5'- ----cGCAGA-CGCGGCGGGUCGGaGGg -3'
miRNA:   3'- guaucCGUUUcGCGCUGCCCGGCC-CU- -5'
2626 5' -58.5 NC_001491.2 + 2606 0.68 0.71443
Target:  5'- aGUAGGCcgcgcAAGcCGCGucgcUGGGCCGcGGAg -3'
miRNA:   3'- gUAUCCGu----UUC-GCGCu---GCCCGGC-CCU- -5'
2626 5' -58.5 NC_001491.2 + 77372 0.68 0.71443
Target:  5'- uGUGGGC-GGGCGCGcCuGGCuCGGGu -3'
miRNA:   3'- gUAUCCGuUUCGCGCuGcCCG-GCCCu -5'
2626 5' -58.5 NC_001491.2 + 69557 0.68 0.674693
Target:  5'- --cAGGCAaagaGAGCGuUGACaGGGgCGGGGu -3'
miRNA:   3'- guaUCCGU----UUCGC-GCUG-CCCgGCCCU- -5'
2626 5' -58.5 NC_001491.2 + 68915 0.68 0.674693
Target:  5'- cCGUGGGCAAcGCccgcCGGCGuGGCCGGc- -3'
miRNA:   3'- -GUAUCCGUUuCGc---GCUGC-CCGGCCcu -5'
2626 5' -58.5 NC_001491.2 + 129887 0.68 0.664653
Target:  5'- ---cGGCAAacaucuGGuUGgGugGGGCCGGGGc -3'
miRNA:   3'- guauCCGUU------UC-GCgCugCCCGGCCCU- -5'
2626 5' -58.5 NC_001491.2 + 137041 0.69 0.628354
Target:  5'- --cAGGCGAGGCGCGcuguuUGGgagcgcaguccuguuGCCGGGGc -3'
miRNA:   3'- guaUCCGUUUCGCGCu----GCC---------------CGGCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.