Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 2626 | 5' | -58.5 | NC_001491.2 | + | 99045 | 0.66 | 0.807758 |
|
Target: 5'- aCAUAGGCcaaaauuAGCGCGGCGcGGUCugcgcgauGGAg -3' miRNA: 3'- -GUAUCCGuu-----UCGCGCUGC-CCGGc-------CCU- -5' |
|||||||
| 2626 | 5' | -58.5 | NC_001491.2 | + | 105675 | 0.66 | 0.780087 |
|
Target: 5'- --gGGGCAGAGgGgGAgCGGGUggaagagUGGGAg -3' miRNA: 3'- guaUCCGUUUCgCgCU-GCCCG-------GCCCU- -5' |
|||||||
| 2626 | 5' | -58.5 | NC_001491.2 | + | 105738 | 0.66 | 0.780087 |
|
Target: 5'- --gGGGCAGAGgGgGAgCGGGUggaagagUGGGAg -3' miRNA: 3'- guaUCCGUUUCgCgCU-GCCCG-------GCCCU- -5' |
|||||||
| 2626 | 5' | -58.5 | NC_001491.2 | + | 105800 | 0.66 | 0.780087 |
|
Target: 5'- --gGGGCAGAGgGgGAgCGGGUggaagagUGGGAg -3' miRNA: 3'- guaUCCGUUUCgCgCU-GCCCG-------GCCCU- -5' |
|||||||
| 2626 | 5' | -58.5 | NC_001491.2 | + | 105863 | 0.66 | 0.780087 |
|
Target: 5'- --gGGGCAGAGgGgGAgCGGGUggaagagUGGGAg -3' miRNA: 3'- guaUCCGUUUCgCgCU-GCCCG-------GCCCU- -5' |
|||||||
| 2626 | 5' | -58.5 | NC_001491.2 | + | 129887 | 0.68 | 0.664653 |
|
Target: 5'- ---cGGCAAacaucuGGuUGgGugGGGCCGGGGc -3' miRNA: 3'- guauCCGUU------UC-GCgCugCCCGGCCCU- -5' |
|||||||
| 2626 | 5' | -58.5 | NC_001491.2 | + | 137041 | 0.69 | 0.628354 |
|
Target: 5'- --cAGGCGAGGCGCGcuguuUGGgagcgcaguccuguuGCCGGGGc -3' miRNA: 3'- guaUCCGUUUCGCGCu----GCC---------------CGGCCCU- -5' |
|||||||
| 2626 | 5' | -58.5 | NC_001491.2 | + | 147032 | 1.09 | 0.001681 |
|
Target: 5'- aCAUAGGCAAAGCGCGACGGGCCGGGAa -3' miRNA: 3'- -GUAUCCGUUUCGCGCUGCCCGGCCCU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home