miRNA display CGI


Results 41 - 57 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26260 3' -54.5 NC_005345.2 + 40826 0.69 0.547678
Target:  5'- cGCCGCCgGAACGCuGcugcugCGCgccgcCAUGGCg -3'
miRNA:   3'- -UGGCGG-CUUGCGuCaa----GCGa----GUACUG- -5'
26260 3' -54.5 NC_005345.2 + 20101 0.69 0.53678
Target:  5'- cGCCGCCGccACGCAGaaacUCGaaCGUGAUg -3'
miRNA:   3'- -UGGCGGCu-UGCGUCa---AGCgaGUACUG- -5'
26260 3' -54.5 NC_005345.2 + 5604 0.69 0.504568
Target:  5'- uGCCGUgGGGCGCcGg--GCUCGUGGCc -3'
miRNA:   3'- -UGGCGgCUUGCGuCaagCGAGUACUG- -5'
26260 3' -54.5 NC_005345.2 + 37501 0.7 0.495066
Target:  5'- cCCGCCGGGCGCGGgcugcggcgcggugCGCUCGc--- -3'
miRNA:   3'- uGGCGGCUUGCGUCaa------------GCGAGUacug -5'
26260 3' -54.5 NC_005345.2 + 12982 0.7 0.483564
Target:  5'- gACCaGCUGAacACGCAGUUCGCgcugCcggccgcacgGUGGCg -3'
miRNA:   3'- -UGG-CGGCU--UGCGUCAAGCGa---G----------UACUG- -5'
26260 3' -54.5 NC_005345.2 + 46389 0.7 0.47322
Target:  5'- gGCCGCCGcGCGUGGcgCGCUCcacaugcgGGCc -3'
miRNA:   3'- -UGGCGGCuUGCGUCaaGCGAGua------CUG- -5'
26260 3' -54.5 NC_005345.2 + 41321 0.7 0.47322
Target:  5'- aGCUGCCGAGCGCccugcGUcUCGCUCAc--- -3'
miRNA:   3'- -UGGCGGCUUGCGu----CA-AGCGAGUacug -5'
26260 3' -54.5 NC_005345.2 + 32815 0.71 0.433015
Target:  5'- uGCCGCCGAcgagcuuucgcuGCGCGGgagugaGCUCggGAUg -3'
miRNA:   3'- -UGGCGGCU------------UGCGUCaag---CGAGuaCUG- -5'
26260 3' -54.5 NC_005345.2 + 47781 0.71 0.431057
Target:  5'- aACCGCCG-ACGCGacugcaccgGCUCGUGGCa -3'
miRNA:   3'- -UGGCGGCuUGCGUcaag-----CGAGUACUG- -5'
26260 3' -54.5 NC_005345.2 + 47536 0.71 0.423277
Target:  5'- gACCGaccucaucaCCGAACGCgaccgcaaGGaaCGCUCGUGACg -3'
miRNA:   3'- -UGGC---------GGCUUGCG--------UCaaGCGAGUACUG- -5'
26260 3' -54.5 NC_005345.2 + 43102 0.71 0.413672
Target:  5'- cCCGCCGuAGCGCGGUgaGCUgcaGUGGCu -3'
miRNA:   3'- uGGCGGC-UUGCGUCAagCGAg--UACUG- -5'
26260 3' -54.5 NC_005345.2 + 3892 0.72 0.37663
Target:  5'- uCCGCCGAcgcuCGCAGUgugggggugCGC-CGUGGCu -3'
miRNA:   3'- uGGCGGCUu---GCGUCAa--------GCGaGUACUG- -5'
26260 3' -54.5 NC_005345.2 + 40770 0.72 0.37663
Target:  5'- gGCCGCCGGcCGCGGUUCcacacCUCGccGACa -3'
miRNA:   3'- -UGGCGGCUuGCGUCAAGc----GAGUa-CUG- -5'
26260 3' -54.5 NC_005345.2 + 29296 0.72 0.367725
Target:  5'- gUCGCCcGAgGCAGcgCGCUCGUGAa -3'
miRNA:   3'- uGGCGGcUUgCGUCaaGCGAGUACUg -5'
26260 3' -54.5 NC_005345.2 + 20222 0.73 0.317392
Target:  5'- cCCGCCGcAGCGCA--UCGCcugCGUGGCa -3'
miRNA:   3'- uGGCGGC-UUGCGUcaAGCGa--GUACUG- -5'
26260 3' -54.5 NC_005345.2 + 18638 0.74 0.294238
Target:  5'- cGCUGCCGGuaccCGCccgGGUUCGC-CAUGACc -3'
miRNA:   3'- -UGGCGGCUu---GCG---UCAAGCGaGUACUG- -5'
26260 3' -54.5 NC_005345.2 + 45629 1.1 0.000835
Target:  5'- cACCGCCGAACGCAGUUCGCUCAUGACg -3'
miRNA:   3'- -UGGCGGCUUGCGUCAAGCGAGUACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.