miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26260 3' -54.5 NC_005345.2 + 33034 0.67 0.6702
Target:  5'- gGCCGCgGggUGCGGUcCgGCUC--GACg -3'
miRNA:   3'- -UGGCGgCuuGCGUCAaG-CGAGuaCUG- -5'
26260 3' -54.5 NC_005345.2 + 42531 0.67 0.6702
Target:  5'- cACCGCCGGGCGCaaccgccgccGGUccacaGCUCGUucgccugcGACa -3'
miRNA:   3'- -UGGCGGCUUGCG----------UCAag---CGAGUA--------CUG- -5'
26260 3' -54.5 NC_005345.2 + 17880 0.67 0.659036
Target:  5'- uCCGCCGuGGCGUAG-UCGCcgaUCAcGGCg -3'
miRNA:   3'- uGGCGGC-UUGCGUCaAGCG---AGUaCUG- -5'
26260 3' -54.5 NC_005345.2 + 13777 0.67 0.647846
Target:  5'- aGCgCGCCGAACGCGG---GCUUgagGACg -3'
miRNA:   3'- -UG-GCGGCUUGCGUCaagCGAGua-CUG- -5'
26260 3' -54.5 NC_005345.2 + 4633 0.67 0.647846
Target:  5'- aGCUGCUGAACGCGGaUCGggggcaggCGUGAa -3'
miRNA:   3'- -UGGCGGCUUGCGUCaAGCga------GUACUg -5'
26260 3' -54.5 NC_005345.2 + 7809 0.67 0.647846
Target:  5'- cGCCGCCGGACGCcGUgaaCGUcggCGUGu- -3'
miRNA:   3'- -UGGCGGCUUGCGuCAa--GCGa--GUACug -5'
26260 3' -54.5 NC_005345.2 + 31646 0.67 0.647846
Target:  5'- --gGCCGGACGCuGcgaGUUCGUGACc -3'
miRNA:   3'- uggCGGCUUGCGuCaagCGAGUACUG- -5'
26260 3' -54.5 NC_005345.2 + 11512 0.67 0.636641
Target:  5'- -aCGCCGGACuGCAGc-CGCUCAcGAa -3'
miRNA:   3'- ugGCGGCUUG-CGUCaaGCGAGUaCUg -5'
26260 3' -54.5 NC_005345.2 + 41511 0.67 0.636641
Target:  5'- cACCGucCCGAACGCGGagCGCgagCGUcucGGCg -3'
miRNA:   3'- -UGGC--GGCUUGCGUCaaGCGa--GUA---CUG- -5'
26260 3' -54.5 NC_005345.2 + 31366 0.67 0.636641
Target:  5'- -aUGCCGGACGCGG-UCGCcgUCAUcGCc -3'
miRNA:   3'- ugGCGGCUUGCGUCaAGCG--AGUAcUG- -5'
26260 3' -54.5 NC_005345.2 + 31455 0.67 0.636641
Target:  5'- gUCGCCGAggccgGCGCGGUUCGUaCG-GAUc -3'
miRNA:   3'- uGGCGGCU-----UGCGUCAAGCGaGUaCUG- -5'
26260 3' -54.5 NC_005345.2 + 12497 0.67 0.625432
Target:  5'- aGCuCGCCGAGugguCGCAGUaCGCggGUGAUc -3'
miRNA:   3'- -UG-GCGGCUU----GCGUCAaGCGagUACUG- -5'
26260 3' -54.5 NC_005345.2 + 44000 0.68 0.603043
Target:  5'- gGCCGCCGcGGCGC-GUUC-CUCcUGAUc -3'
miRNA:   3'- -UGGCGGC-UUGCGuCAAGcGAGuACUG- -5'
26260 3' -54.5 NC_005345.2 + 284 0.68 0.600808
Target:  5'- gGCCGgCGAAUGCugguacaaccacGUcaccuucgacccUCGCUCGUGACc -3'
miRNA:   3'- -UGGCgGCUUGCGu-----------CA------------AGCGAGUACUG- -5'
26260 3' -54.5 NC_005345.2 + 35879 0.68 0.591882
Target:  5'- aGCUGCCGGugcaGCGGUUCGC-CGacGGCg -3'
miRNA:   3'- -UGGCGGCUug--CGUCAAGCGaGUa-CUG- -5'
26260 3' -54.5 NC_005345.2 + 26846 0.68 0.591882
Target:  5'- gGCgCGCCGAGCGCGGgcaaCGUgCccGACa -3'
miRNA:   3'- -UG-GCGGCUUGCGUCaa--GCGaGuaCUG- -5'
26260 3' -54.5 NC_005345.2 + 7888 0.68 0.58854
Target:  5'- -aCGCCGAggcgGCGCAcGgcugcucguaugacgCGCUCAUGGCc -3'
miRNA:   3'- ugGCGGCU----UGCGU-Caa-------------GCGAGUACUG- -5'
26260 3' -54.5 NC_005345.2 + 42906 0.68 0.580756
Target:  5'- aACCGCCG---GUAG-UCGCUCggGGCg -3'
miRNA:   3'- -UGGCGGCuugCGUCaAGCGAGuaCUG- -5'
26260 3' -54.5 NC_005345.2 + 5237 0.68 0.580756
Target:  5'- gAUCGCCGAcGCGCuGcgCGCcgcCGUGGCg -3'
miRNA:   3'- -UGGCGGCU-UGCGuCaaGCGa--GUACUG- -5'
26260 3' -54.5 NC_005345.2 + 15293 0.68 0.558646
Target:  5'- -aCGCCGAACGCcucggcgaGGUUCGUcgccgacuuggUCAgUGACg -3'
miRNA:   3'- ugGCGGCUUGCG--------UCAAGCG-----------AGU-ACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.