miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26260 3' -54.5 NC_005345.2 + 20222 0.73 0.317392
Target:  5'- cCCGCCGcAGCGCA--UCGCcugCGUGGCa -3'
miRNA:   3'- uGGCGGC-UUGCGUcaAGCGa--GUACUG- -5'
26260 3' -54.5 NC_005345.2 + 22036 0.66 0.681327
Target:  5'- uGCCGCCGuGGCGCcgAGcaugUCGgC-CAUGACg -3'
miRNA:   3'- -UGGCGGC-UUGCG--UCa---AGC-GaGUACUG- -5'
26260 3' -54.5 NC_005345.2 + 26360 0.66 0.714368
Target:  5'- cCCGCCGAggaucGCGCGGaUCcCUCccgagGUGACc -3'
miRNA:   3'- uGGCGGCU-----UGCGUCaAGcGAG-----UACUG- -5'
26260 3' -54.5 NC_005345.2 + 26719 0.66 0.72523
Target:  5'- gUCGCCGAACGUc---CGCccCGUGACa -3'
miRNA:   3'- uGGCGGCUUGCGucaaGCGa-GUACUG- -5'
26260 3' -54.5 NC_005345.2 + 26846 0.68 0.591882
Target:  5'- gGCgCGCCGAGCGCGGgcaaCGUgCccGACa -3'
miRNA:   3'- -UG-GCGGCUUGCGUCaa--GCGaGuaCUG- -5'
26260 3' -54.5 NC_005345.2 + 27093 0.66 0.735996
Target:  5'- -gUGCCGGAcccacCGCGGUcgGCUCGUGAg -3'
miRNA:   3'- ugGCGGCUU-----GCGUCAagCGAGUACUg -5'
26260 3' -54.5 NC_005345.2 + 29296 0.72 0.367725
Target:  5'- gUCGCCcGAgGCAGcgCGCUCGUGAa -3'
miRNA:   3'- uGGCGGcUUgCGUCaaGCGAGUACUg -5'
26260 3' -54.5 NC_005345.2 + 29633 0.66 0.692405
Target:  5'- uGCCGCCGAucgagguguacgACGCGaaggUCGC-CGUcGACg -3'
miRNA:   3'- -UGGCGGCU------------UGCGUca--AGCGaGUA-CUG- -5'
26260 3' -54.5 NC_005345.2 + 30168 0.66 0.702324
Target:  5'- cCCGCCGGccagcggcgacccAUGCGGcgagCGCUUcgGACc -3'
miRNA:   3'- uGGCGGCU-------------UGCGUCaa--GCGAGuaCUG- -5'
26260 3' -54.5 NC_005345.2 + 30402 0.66 0.72523
Target:  5'- uACC-UCGAcgACGCGuccgCGCUCAUGGCg -3'
miRNA:   3'- -UGGcGGCU--UGCGUcaa-GCGAGUACUG- -5'
26260 3' -54.5 NC_005345.2 + 31366 0.67 0.636641
Target:  5'- -aUGCCGGACGCGG-UCGCcgUCAUcGCc -3'
miRNA:   3'- ugGCGGCUUGCGUCaAGCG--AGUAcUG- -5'
26260 3' -54.5 NC_005345.2 + 31455 0.67 0.636641
Target:  5'- gUCGCCGAggccgGCGCGGUUCGUaCG-GAUc -3'
miRNA:   3'- uGGCGGCU-----UGCGUCAAGCGaGUaCUG- -5'
26260 3' -54.5 NC_005345.2 + 31646 0.67 0.647846
Target:  5'- --gGCCGGACGCuGcgaGUUCGUGACc -3'
miRNA:   3'- uggCGGCUUGCGuCaagCGAGUACUG- -5'
26260 3' -54.5 NC_005345.2 + 32815 0.71 0.433015
Target:  5'- uGCCGCCGAcgagcuuucgcuGCGCGGgagugaGCUCggGAUg -3'
miRNA:   3'- -UGGCGGCU------------UGCGUCaag---CGAGuaCUG- -5'
26260 3' -54.5 NC_005345.2 + 33034 0.67 0.6702
Target:  5'- gGCCGCgGggUGCGGUcCgGCUC--GACg -3'
miRNA:   3'- -UGGCGgCuuGCGUCAaG-CGAGuaCUG- -5'
26260 3' -54.5 NC_005345.2 + 34207 0.66 0.703423
Target:  5'- cGCCGUCaccaugGGGCaGCAGUUCGCcCggGGCg -3'
miRNA:   3'- -UGGCGG------CUUG-CGUCAAGCGaGuaCUG- -5'
26260 3' -54.5 NC_005345.2 + 35879 0.68 0.591882
Target:  5'- aGCUGCCGGugcaGCGGUUCGC-CGacGGCg -3'
miRNA:   3'- -UGGCGGCUug--CGUCAAGCGaGUa-CUG- -5'
26260 3' -54.5 NC_005345.2 + 36366 0.66 0.72523
Target:  5'- uUCGCCGcguACGCGGgcgCGCUCcgcGGCc -3'
miRNA:   3'- uGGCGGCu--UGCGUCaa-GCGAGua-CUG- -5'
26260 3' -54.5 NC_005345.2 + 37501 0.7 0.495066
Target:  5'- cCCGCCGGGCGCGGgcugcggcgcggugCGCUCGc--- -3'
miRNA:   3'- uGGCGGCUUGCGUCaa------------GCGAGUacug -5'
26260 3' -54.5 NC_005345.2 + 40770 0.72 0.37663
Target:  5'- gGCCGCCGGcCGCGGUUCcacacCUCGccGACa -3'
miRNA:   3'- -UGGCGGCUuGCGUCAAGc----GAGUa-CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.