miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26260 3' -54.5 NC_005345.2 + 284 0.68 0.600808
Target:  5'- gGCCGgCGAAUGCugguacaaccacGUcaccuucgacccUCGCUCGUGACc -3'
miRNA:   3'- -UGGCgGCUUGCGu-----------CA------------AGCGAGUACUG- -5'
26260 3' -54.5 NC_005345.2 + 736 0.66 0.692405
Target:  5'- cGCCGUCGAcgugccgcuCGCGGU--GCUCGUGGg -3'
miRNA:   3'- -UGGCGGCUu--------GCGUCAagCGAGUACUg -5'
26260 3' -54.5 NC_005345.2 + 3892 0.72 0.37663
Target:  5'- uCCGCCGAcgcuCGCAGUgugggggugCGC-CGUGGCu -3'
miRNA:   3'- uGGCGGCUu---GCGUCAa--------GCGaGUACUG- -5'
26260 3' -54.5 NC_005345.2 + 4633 0.67 0.647846
Target:  5'- aGCUGCUGAACGCGGaUCGggggcaggCGUGAa -3'
miRNA:   3'- -UGGCGGCUUGCGUCaAGCga------GUACUg -5'
26260 3' -54.5 NC_005345.2 + 5237 0.68 0.580756
Target:  5'- gAUCGCCGAcGCGCuGcgCGCcgcCGUGGCg -3'
miRNA:   3'- -UGGCGGCU-UGCGuCaaGCGa--GUACUG- -5'
26260 3' -54.5 NC_005345.2 + 5604 0.69 0.504568
Target:  5'- uGCCGUgGGGCGCcGg--GCUCGUGGCc -3'
miRNA:   3'- -UGGCGgCUUGCGuCaagCGAGUACUG- -5'
26260 3' -54.5 NC_005345.2 + 6127 0.66 0.720897
Target:  5'- gGCCGCCGAcgACGCAGUacgggaagaacagCGCUUcgaucugcagGACc -3'
miRNA:   3'- -UGGCGGCU--UGCGUCAa------------GCGAGua--------CUG- -5'
26260 3' -54.5 NC_005345.2 + 7809 0.67 0.647846
Target:  5'- cGCCGCCGGACGCcGUgaaCGUcggCGUGu- -3'
miRNA:   3'- -UGGCGGCUUGCGuCAa--GCGa--GUACug -5'
26260 3' -54.5 NC_005345.2 + 7888 0.68 0.58854
Target:  5'- -aCGCCGAggcgGCGCAcGgcugcucguaugacgCGCUCAUGGCc -3'
miRNA:   3'- ugGCGGCU----UGCGU-Caa-------------GCGAGUACUG- -5'
26260 3' -54.5 NC_005345.2 + 9683 0.66 0.72523
Target:  5'- cGCCGCCGGcUGCAGgcCGaUCAgcgGGCc -3'
miRNA:   3'- -UGGCGGCUuGCGUCaaGCgAGUa--CUG- -5'
26260 3' -54.5 NC_005345.2 + 11512 0.67 0.636641
Target:  5'- -aCGCCGGACuGCAGc-CGCUCAcGAa -3'
miRNA:   3'- ugGCGGCUUG-CGUCaaGCGAGUaCUg -5'
26260 3' -54.5 NC_005345.2 + 12497 0.67 0.625432
Target:  5'- aGCuCGCCGAGugguCGCAGUaCGCggGUGAUc -3'
miRNA:   3'- -UG-GCGGCUU----GCGUCAaGCGagUACUG- -5'
26260 3' -54.5 NC_005345.2 + 12982 0.7 0.483564
Target:  5'- gACCaGCUGAacACGCAGUUCGCgcugCcggccgcacgGUGGCg -3'
miRNA:   3'- -UGG-CGGCU--UGCGUCAAGCGa---G----------UACUG- -5'
26260 3' -54.5 NC_005345.2 + 13178 0.66 0.733851
Target:  5'- uGCgGCCGGGgucCGaCAGgaagucaacccCGCUCAUGACg -3'
miRNA:   3'- -UGgCGGCUU---GC-GUCaa---------GCGAGUACUG- -5'
26260 3' -54.5 NC_005345.2 + 13777 0.67 0.647846
Target:  5'- aGCgCGCCGAACGCGG---GCUUgagGACg -3'
miRNA:   3'- -UG-GCGGCUUGCGUCaagCGAGua-CUG- -5'
26260 3' -54.5 NC_005345.2 + 15293 0.68 0.558646
Target:  5'- -aCGCCGAACGCcucggcgaGGUUCGUcgccgacuuggUCAgUGACg -3'
miRNA:   3'- ugGCGGCUUGCG--------UCAAGCG-----------AGU-ACUG- -5'
26260 3' -54.5 NC_005345.2 + 17880 0.67 0.659036
Target:  5'- uCCGCCGuGGCGUAG-UCGCcgaUCAcGGCg -3'
miRNA:   3'- uGGCGGC-UUGCGUCaAGCG---AGUaCUG- -5'
26260 3' -54.5 NC_005345.2 + 18638 0.74 0.294238
Target:  5'- cGCUGCCGGuaccCGCccgGGUUCGC-CAUGACc -3'
miRNA:   3'- -UGGCGGCUu---GCG---UCAAGCGaGUACUG- -5'
26260 3' -54.5 NC_005345.2 + 18932 0.66 0.681327
Target:  5'- cACCGCCGGAUGCGcGaUCGUcgCccGGCa -3'
miRNA:   3'- -UGGCGGCUUGCGU-CaAGCGa-GuaCUG- -5'
26260 3' -54.5 NC_005345.2 + 20101 0.69 0.53678
Target:  5'- cGCCGCCGccACGCAGaaacUCGaaCGUGAUg -3'
miRNA:   3'- -UGGCGGCu-UGCGUCa---AGCgaGUACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.