miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26260 3' -54.5 NC_005345.2 + 20222 0.73 0.317392
Target:  5'- cCCGCCGcAGCGCA--UCGCcugCGUGGCa -3'
miRNA:   3'- uGGCGGC-UUGCGUcaAGCGa--GUACUG- -5'
26260 3' -54.5 NC_005345.2 + 11512 0.67 0.636641
Target:  5'- -aCGCCGGACuGCAGc-CGCUCAcGAa -3'
miRNA:   3'- ugGCGGCUUG-CGUCaaGCGAGUaCUg -5'
26260 3' -54.5 NC_005345.2 + 4633 0.67 0.647846
Target:  5'- aGCUGCUGAACGCGGaUCGggggcaggCGUGAa -3'
miRNA:   3'- -UGGCGGCUUGCGUCaAGCga------GUACUg -5'
26260 3' -54.5 NC_005345.2 + 36366 0.66 0.72523
Target:  5'- uUCGCCGcguACGCGGgcgCGCUCcgcGGCc -3'
miRNA:   3'- uGGCGGCu--UGCGUCaa-GCGAGua-CUG- -5'
26260 3' -54.5 NC_005345.2 + 47536 0.71 0.423277
Target:  5'- gACCGaccucaucaCCGAACGCgaccgcaaGGaaCGCUCGUGACg -3'
miRNA:   3'- -UGGC---------GGCUUGCG--------UCaaGCGAGUACUG- -5'
26260 3' -54.5 NC_005345.2 + 46389 0.7 0.47322
Target:  5'- gGCCGCCGcGCGUGGcgCGCUCcacaugcgGGCc -3'
miRNA:   3'- -UGGCGGCuUGCGUCaaGCGAGua------CUG- -5'
26260 3' -54.5 NC_005345.2 + 5604 0.69 0.504568
Target:  5'- uGCCGUgGGGCGCcGg--GCUCGUGGCc -3'
miRNA:   3'- -UGGCGgCUUGCGuCaagCGAGUACUG- -5'
26260 3' -54.5 NC_005345.2 + 40826 0.69 0.547678
Target:  5'- cGCCGCCgGAACGCuGcugcugCGCgccgcCAUGGCg -3'
miRNA:   3'- -UGGCGG-CUUGCGuCaa----GCGa----GUACUG- -5'
26260 3' -54.5 NC_005345.2 + 26846 0.68 0.591882
Target:  5'- gGCgCGCCGAGCGCGGgcaaCGUgCccGACa -3'
miRNA:   3'- -UG-GCGGCUUGCGUCaa--GCGaGuaCUG- -5'
26260 3' -54.5 NC_005345.2 + 31455 0.67 0.636641
Target:  5'- gUCGCCGAggccgGCGCGGUUCGUaCG-GAUc -3'
miRNA:   3'- uGGCGGCU-----UGCGUCAAGCGaGUaCUG- -5'
26260 3' -54.5 NC_005345.2 + 284 0.68 0.600808
Target:  5'- gGCCGgCGAAUGCugguacaaccacGUcaccuucgacccUCGCUCGUGACc -3'
miRNA:   3'- -UGGCgGCUUGCGu-----------CA------------AGCGAGUACUG- -5'
26260 3' -54.5 NC_005345.2 + 7888 0.68 0.58854
Target:  5'- -aCGCCGAggcgGCGCAcGgcugcucguaugacgCGCUCAUGGCc -3'
miRNA:   3'- ugGCGGCU----UGCGU-Caa-------------GCGAGUACUG- -5'
26260 3' -54.5 NC_005345.2 + 29296 0.72 0.367725
Target:  5'- gUCGCCcGAgGCAGcgCGCUCGUGAa -3'
miRNA:   3'- uGGCGGcUUgCGUCaaGCGAGUACUg -5'
26260 3' -54.5 NC_005345.2 + 44000 0.68 0.603043
Target:  5'- gGCCGCCGcGGCGC-GUUC-CUCcUGAUc -3'
miRNA:   3'- -UGGCGGC-UUGCGuCAAGcGAGuACUG- -5'
26260 3' -54.5 NC_005345.2 + 3892 0.72 0.37663
Target:  5'- uCCGCCGAcgcuCGCAGUgugggggugCGC-CGUGGCu -3'
miRNA:   3'- uGGCGGCUu---GCGUCAa--------GCGaGUACUG- -5'
26260 3' -54.5 NC_005345.2 + 5237 0.68 0.580756
Target:  5'- gAUCGCCGAcGCGCuGcgCGCcgcCGUGGCg -3'
miRNA:   3'- -UGGCGGCU-UGCGuCaaGCGa--GUACUG- -5'
26260 3' -54.5 NC_005345.2 + 12497 0.67 0.625432
Target:  5'- aGCuCGCCGAGugguCGCAGUaCGCggGUGAUc -3'
miRNA:   3'- -UG-GCGGCUU----GCGUCAaGCGagUACUG- -5'
26260 3' -54.5 NC_005345.2 + 31366 0.67 0.636641
Target:  5'- -aUGCCGGACGCGG-UCGCcgUCAUcGCc -3'
miRNA:   3'- ugGCGGCUUGCGUCaAGCG--AGUAcUG- -5'
26260 3' -54.5 NC_005345.2 + 40770 0.72 0.37663
Target:  5'- gGCCGCCGGcCGCGGUUCcacacCUCGccGACa -3'
miRNA:   3'- -UGGCGGCUuGCGUCAAGc----GAGUa-CUG- -5'
26260 3' -54.5 NC_005345.2 + 12982 0.7 0.483564
Target:  5'- gACCaGCUGAacACGCAGUUCGCgcugCcggccgcacgGUGGCg -3'
miRNA:   3'- -UGG-CGGCU--UGCGUCAAGCGa---G----------UACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.