Results 1 - 20 of 57 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26260 | 3' | -54.5 | NC_005345.2 | + | 42906 | 0.68 | 0.580756 |
Target: 5'- aACCGCCG---GUAG-UCGCUCggGGCg -3' miRNA: 3'- -UGGCGGCuugCGUCaAGCGAGuaCUG- -5' |
|||||||
26260 | 3' | -54.5 | NC_005345.2 | + | 22036 | 0.66 | 0.681327 |
Target: 5'- uGCCGCCGuGGCGCcgAGcaugUCGgC-CAUGACg -3' miRNA: 3'- -UGGCGGC-UUGCG--UCa---AGC-GaGUACUG- -5' |
|||||||
26260 | 3' | -54.5 | NC_005345.2 | + | 42531 | 0.67 | 0.6702 |
Target: 5'- cACCGCCGGGCGCaaccgccgccGGUccacaGCUCGUucgccugcGACa -3' miRNA: 3'- -UGGCGGCUUGCG----------UCAag---CGAGUA--------CUG- -5' |
|||||||
26260 | 3' | -54.5 | NC_005345.2 | + | 33034 | 0.67 | 0.6702 |
Target: 5'- gGCCGCgGggUGCGGUcCgGCUC--GACg -3' miRNA: 3'- -UGGCGgCuuGCGUCAaG-CGAGuaCUG- -5' |
|||||||
26260 | 3' | -54.5 | NC_005345.2 | + | 17880 | 0.67 | 0.659036 |
Target: 5'- uCCGCCGuGGCGUAG-UCGCcgaUCAcGGCg -3' miRNA: 3'- uGGCGGC-UUGCGUCaAGCG---AGUaCUG- -5' |
|||||||
26260 | 3' | -54.5 | NC_005345.2 | + | 13777 | 0.67 | 0.647846 |
Target: 5'- aGCgCGCCGAACGCGG---GCUUgagGACg -3' miRNA: 3'- -UG-GCGGCUUGCGUCaagCGAGua-CUG- -5' |
|||||||
26260 | 3' | -54.5 | NC_005345.2 | + | 7809 | 0.67 | 0.647846 |
Target: 5'- cGCCGCCGGACGCcGUgaaCGUcggCGUGu- -3' miRNA: 3'- -UGGCGGCUUGCGuCAa--GCGa--GUACug -5' |
|||||||
26260 | 3' | -54.5 | NC_005345.2 | + | 31646 | 0.67 | 0.647846 |
Target: 5'- --gGCCGGACGCuGcgaGUUCGUGACc -3' miRNA: 3'- uggCGGCUUGCGuCaagCGAGUACUG- -5' |
|||||||
26260 | 3' | -54.5 | NC_005345.2 | + | 41511 | 0.67 | 0.636641 |
Target: 5'- cACCGucCCGAACGCGGagCGCgagCGUcucGGCg -3' miRNA: 3'- -UGGC--GGCUUGCGUCaaGCGa--GUA---CUG- -5' |
|||||||
26260 | 3' | -54.5 | NC_005345.2 | + | 45030 | 0.66 | 0.681327 |
Target: 5'- aGCCGCuCGAACGCcaacCGCUCggGGg -3' miRNA: 3'- -UGGCG-GCUUGCGucaaGCGAGuaCUg -5' |
|||||||
26260 | 3' | -54.5 | NC_005345.2 | + | 736 | 0.66 | 0.692405 |
Target: 5'- cGCCGUCGAcgugccgcuCGCGGU--GCUCGUGGg -3' miRNA: 3'- -UGGCGGCUu--------GCGUCAagCGAGUACUg -5' |
|||||||
26260 | 3' | -54.5 | NC_005345.2 | + | 30168 | 0.66 | 0.702324 |
Target: 5'- cCCGCCGGccagcggcgacccAUGCGGcgagCGCUUcgGACc -3' miRNA: 3'- uGGCGGCU-------------UGCGUCaa--GCGAGuaCUG- -5' |
|||||||
26260 | 3' | -54.5 | NC_005345.2 | + | 13178 | 0.66 | 0.733851 |
Target: 5'- uGCgGCCGGGgucCGaCAGgaagucaacccCGCUCAUGACg -3' miRNA: 3'- -UGgCGGCUU---GC-GUCaa---------GCGAGUACUG- -5' |
|||||||
26260 | 3' | -54.5 | NC_005345.2 | + | 26719 | 0.66 | 0.72523 |
Target: 5'- gUCGCCGAACGUc---CGCccCGUGACa -3' miRNA: 3'- uGGCGGCUUGCGucaaGCGa-GUACUG- -5' |
|||||||
26260 | 3' | -54.5 | NC_005345.2 | + | 6127 | 0.66 | 0.720897 |
Target: 5'- gGCCGCCGAcgACGCAGUacgggaagaacagCGCUUcgaucugcagGACc -3' miRNA: 3'- -UGGCGGCU--UGCGUCAa------------GCGAGua--------CUG- -5' |
|||||||
26260 | 3' | -54.5 | NC_005345.2 | + | 47107 | 0.66 | 0.714368 |
Target: 5'- cCCGCCGGgccGCGcCGGgccCGCUCGacgagGACg -3' miRNA: 3'- uGGCGGCU---UGC-GUCaa-GCGAGUa----CUG- -5' |
|||||||
26260 | 3' | -54.5 | NC_005345.2 | + | 43982 | 0.66 | 0.714368 |
Target: 5'- aGCCuUCGAGgGCGGcgacgagUCGCUCGUGcACg -3' miRNA: 3'- -UGGcGGCUUgCGUCa------AGCGAGUAC-UG- -5' |
|||||||
26260 | 3' | -54.5 | NC_005345.2 | + | 41570 | 0.66 | 0.714368 |
Target: 5'- cGCuCGCCGugcuCGCGGgcgugcUCGgUCGUGAUg -3' miRNA: 3'- -UG-GCGGCuu--GCGUCa-----AGCgAGUACUG- -5' |
|||||||
26260 | 3' | -54.5 | NC_005345.2 | + | 26360 | 0.66 | 0.714368 |
Target: 5'- cCCGCCGAggaucGCGCGGaUCcCUCccgagGUGACc -3' miRNA: 3'- uGGCGGCU-----UGCGUCaAGcGAG-----UACUG- -5' |
|||||||
26260 | 3' | -54.5 | NC_005345.2 | + | 48276 | 0.66 | 0.714368 |
Target: 5'- uGCCGcCCGAccgcGCGCAGUgcgCGCUgAUc-- -3' miRNA: 3'- -UGGC-GGCU----UGCGUCAa--GCGAgUAcug -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home