miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26260 3' -54.5 NC_005345.2 + 18932 0.66 0.681327
Target:  5'- cACCGCCGGAUGCGcGaUCGUcgCccGGCa -3'
miRNA:   3'- -UGGCGGCUUGCGU-CaAGCGa-GuaCUG- -5'
26260 3' -54.5 NC_005345.2 + 30402 0.66 0.72523
Target:  5'- uACC-UCGAcgACGCGuccgCGCUCAUGGCg -3'
miRNA:   3'- -UGGcGGCU--UGCGUcaa-GCGAGUACUG- -5'
26260 3' -54.5 NC_005345.2 + 44000 0.68 0.603043
Target:  5'- gGCCGCCGcGGCGC-GUUC-CUCcUGAUc -3'
miRNA:   3'- -UGGCGGC-UUGCGuCAAGcGAGuACUG- -5'
26260 3' -54.5 NC_005345.2 + 11512 0.67 0.636641
Target:  5'- -aCGCCGGACuGCAGc-CGCUCAcGAa -3'
miRNA:   3'- ugGCGGCUUG-CGUCaaGCGAGUaCUg -5'
26260 3' -54.5 NC_005345.2 + 29633 0.66 0.692405
Target:  5'- uGCCGCCGAucgagguguacgACGCGaaggUCGC-CGUcGACg -3'
miRNA:   3'- -UGGCGGCU------------UGCGUca--AGCGaGUA-CUG- -5'
26260 3' -54.5 NC_005345.2 + 26846 0.68 0.591882
Target:  5'- gGCgCGCCGAGCGCGGgcaaCGUgCccGACa -3'
miRNA:   3'- -UG-GCGGCUUGCGUCaa--GCGaGuaCUG- -5'
26260 3' -54.5 NC_005345.2 + 12497 0.67 0.625432
Target:  5'- aGCuCGCCGAGugguCGCAGUaCGCggGUGAUc -3'
miRNA:   3'- -UG-GCGGCUU----GCGUCAaGCGagUACUG- -5'
26260 3' -54.5 NC_005345.2 + 47781 0.71 0.431057
Target:  5'- aACCGCCG-ACGCGacugcaccgGCUCGUGGCa -3'
miRNA:   3'- -UGGCGGCuUGCGUcaag-----CGAGUACUG- -5'
26260 3' -54.5 NC_005345.2 + 26719 0.66 0.72523
Target:  5'- gUCGCCGAACGUc---CGCccCGUGACa -3'
miRNA:   3'- uGGCGGCUUGCGucaaGCGa-GUACUG- -5'
26260 3' -54.5 NC_005345.2 + 33034 0.67 0.6702
Target:  5'- gGCCGCgGggUGCGGUcCgGCUC--GACg -3'
miRNA:   3'- -UGGCGgCuuGCGUCAaG-CGAGuaCUG- -5'
26260 3' -54.5 NC_005345.2 + 42531 0.67 0.6702
Target:  5'- cACCGCCGGGCGCaaccgccgccGGUccacaGCUCGUucgccugcGACa -3'
miRNA:   3'- -UGGCGGCUUGCG----------UCAag---CGAGUA--------CUG- -5'
26260 3' -54.5 NC_005345.2 + 22036 0.66 0.681327
Target:  5'- uGCCGCCGuGGCGCcgAGcaugUCGgC-CAUGACg -3'
miRNA:   3'- -UGGCGGC-UUGCG--UCa---AGC-GaGUACUG- -5'
26260 3' -54.5 NC_005345.2 + 41570 0.66 0.714368
Target:  5'- cGCuCGCCGugcuCGCGGgcgugcUCGgUCGUGAUg -3'
miRNA:   3'- -UG-GCGGCuu--GCGUCa-----AGCgAGUACUG- -5'
26260 3' -54.5 NC_005345.2 + 45030 0.66 0.681327
Target:  5'- aGCCGCuCGAACGCcaacCGCUCggGGg -3'
miRNA:   3'- -UGGCG-GCUUGCGucaaGCGAGuaCUg -5'
26260 3' -54.5 NC_005345.2 + 37501 0.7 0.495066
Target:  5'- cCCGCCGGGCGCGGgcugcggcgcggugCGCUCGc--- -3'
miRNA:   3'- uGGCGGCUUGCGUCaa------------GCGAGUacug -5'
26260 3' -54.5 NC_005345.2 + 41321 0.7 0.47322
Target:  5'- aGCUGCCGAGCGCccugcGUcUCGCUCAc--- -3'
miRNA:   3'- -UGGCGGCUUGCGu----CA-AGCGAGUacug -5'
26260 3' -54.5 NC_005345.2 + 43982 0.66 0.714368
Target:  5'- aGCCuUCGAGgGCGGcgacgagUCGCUCGUGcACg -3'
miRNA:   3'- -UGGcGGCUUgCGUCa------AGCGAGUAC-UG- -5'
26260 3' -54.5 NC_005345.2 + 32815 0.71 0.433015
Target:  5'- uGCCGCCGAcgagcuuucgcuGCGCGGgagugaGCUCggGAUg -3'
miRNA:   3'- -UGGCGGCU------------UGCGUCaag---CGAGuaCUG- -5'
26260 3' -54.5 NC_005345.2 + 18638 0.74 0.294238
Target:  5'- cGCUGCCGGuaccCGCccgGGUUCGC-CAUGACc -3'
miRNA:   3'- -UGGCGGCUu---GCG---UCAAGCGaGUACUG- -5'
26260 3' -54.5 NC_005345.2 + 43102 0.71 0.413672
Target:  5'- cCCGCCGuAGCGCGGUgaGCUgcaGUGGCu -3'
miRNA:   3'- uGGCGGC-UUGCGUCAagCGAg--UACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.