Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26260 | 3' | -54.5 | NC_005345.2 | + | 7888 | 0.68 | 0.58854 |
Target: 5'- -aCGCCGAggcgGCGCAcGgcugcucguaugacgCGCUCAUGGCc -3' miRNA: 3'- ugGCGGCU----UGCGU-Caa-------------GCGAGUACUG- -5' |
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26260 | 3' | -54.5 | NC_005345.2 | + | 26846 | 0.68 | 0.591882 |
Target: 5'- gGCgCGCCGAGCGCGGgcaaCGUgCccGACa -3' miRNA: 3'- -UG-GCGGCUUGCGUCaa--GCGaGuaCUG- -5' |
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26260 | 3' | -54.5 | NC_005345.2 | + | 35879 | 0.68 | 0.591882 |
Target: 5'- aGCUGCCGGugcaGCGGUUCGC-CGacGGCg -3' miRNA: 3'- -UGGCGGCUug--CGUCAAGCGaGUa-CUG- -5' |
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26260 | 3' | -54.5 | NC_005345.2 | + | 284 | 0.68 | 0.600808 |
Target: 5'- gGCCGgCGAAUGCugguacaaccacGUcaccuucgacccUCGCUCGUGACc -3' miRNA: 3'- -UGGCgGCUUGCGu-----------CA------------AGCGAGUACUG- -5' |
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26260 | 3' | -54.5 | NC_005345.2 | + | 44000 | 0.68 | 0.603043 |
Target: 5'- gGCCGCCGcGGCGC-GUUC-CUCcUGAUc -3' miRNA: 3'- -UGGCGGC-UUGCGuCAAGcGAGuACUG- -5' |
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26260 | 3' | -54.5 | NC_005345.2 | + | 12497 | 0.67 | 0.625432 |
Target: 5'- aGCuCGCCGAGugguCGCAGUaCGCggGUGAUc -3' miRNA: 3'- -UG-GCGGCUU----GCGUCAaGCGagUACUG- -5' |
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26260 | 3' | -54.5 | NC_005345.2 | + | 31455 | 0.67 | 0.636641 |
Target: 5'- gUCGCCGAggccgGCGCGGUUCGUaCG-GAUc -3' miRNA: 3'- uGGCGGCU-----UGCGUCAAGCGaGUaCUG- -5' |
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26260 | 3' | -54.5 | NC_005345.2 | + | 11512 | 0.67 | 0.636641 |
Target: 5'- -aCGCCGGACuGCAGc-CGCUCAcGAa -3' miRNA: 3'- ugGCGGCUUG-CGUCaaGCGAGUaCUg -5' |
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26260 | 3' | -54.5 | NC_005345.2 | + | 31366 | 0.67 | 0.636641 |
Target: 5'- -aUGCCGGACGCGG-UCGCcgUCAUcGCc -3' miRNA: 3'- ugGCGGCUUGCGUCaAGCG--AGUAcUG- -5' |
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26260 | 3' | -54.5 | NC_005345.2 | + | 41511 | 0.67 | 0.636641 |
Target: 5'- cACCGucCCGAACGCGGagCGCgagCGUcucGGCg -3' miRNA: 3'- -UGGC--GGCUUGCGUCaaGCGa--GUA---CUG- -5' |
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26260 | 3' | -54.5 | NC_005345.2 | + | 31646 | 0.67 | 0.647846 |
Target: 5'- --gGCCGGACGCuGcgaGUUCGUGACc -3' miRNA: 3'- uggCGGCUUGCGuCaagCGAGUACUG- -5' |
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26260 | 3' | -54.5 | NC_005345.2 | + | 7809 | 0.67 | 0.647846 |
Target: 5'- cGCCGCCGGACGCcGUgaaCGUcggCGUGu- -3' miRNA: 3'- -UGGCGGCUUGCGuCAa--GCGa--GUACug -5' |
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26260 | 3' | -54.5 | NC_005345.2 | + | 4633 | 0.67 | 0.647846 |
Target: 5'- aGCUGCUGAACGCGGaUCGggggcaggCGUGAa -3' miRNA: 3'- -UGGCGGCUUGCGUCaAGCga------GUACUg -5' |
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26260 | 3' | -54.5 | NC_005345.2 | + | 13777 | 0.67 | 0.647846 |
Target: 5'- aGCgCGCCGAACGCGG---GCUUgagGACg -3' miRNA: 3'- -UG-GCGGCUUGCGUCaagCGAGua-CUG- -5' |
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26260 | 3' | -54.5 | NC_005345.2 | + | 17880 | 0.67 | 0.659036 |
Target: 5'- uCCGCCGuGGCGUAG-UCGCcgaUCAcGGCg -3' miRNA: 3'- uGGCGGC-UUGCGUCaAGCG---AGUaCUG- -5' |
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26260 | 3' | -54.5 | NC_005345.2 | + | 42531 | 0.67 | 0.6702 |
Target: 5'- cACCGCCGGGCGCaaccgccgccGGUccacaGCUCGUucgccugcGACa -3' miRNA: 3'- -UGGCGGCUUGCG----------UCAag---CGAGUA--------CUG- -5' |
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26260 | 3' | -54.5 | NC_005345.2 | + | 33034 | 0.67 | 0.6702 |
Target: 5'- gGCCGCgGggUGCGGUcCgGCUC--GACg -3' miRNA: 3'- -UGGCGgCuuGCGUCAaG-CGAGuaCUG- -5' |
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26260 | 3' | -54.5 | NC_005345.2 | + | 18932 | 0.66 | 0.681327 |
Target: 5'- cACCGCCGGAUGCGcGaUCGUcgCccGGCa -3' miRNA: 3'- -UGGCGGCUUGCGU-CaAGCGa-GuaCUG- -5' |
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26260 | 3' | -54.5 | NC_005345.2 | + | 22036 | 0.66 | 0.681327 |
Target: 5'- uGCCGCCGuGGCGCcgAGcaugUCGgC-CAUGACg -3' miRNA: 3'- -UGGCGGC-UUGCG--UCa---AGC-GaGUACUG- -5' |
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26260 | 3' | -54.5 | NC_005345.2 | + | 45030 | 0.66 | 0.681327 |
Target: 5'- aGCCGCuCGAACGCcaacCGCUCggGGg -3' miRNA: 3'- -UGGCG-GCUUGCGucaaGCGAGuaCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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