miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26260 3' -54.5 NC_005345.2 + 48276 0.66 0.714368
Target:  5'- uGCCGcCCGAccgcGCGCAGUgcgCGCUgAUc-- -3'
miRNA:   3'- -UGGC-GGCU----UGCGUCAa--GCGAgUAcug -5'
26260 3' -54.5 NC_005345.2 + 47781 0.71 0.431057
Target:  5'- aACCGCCG-ACGCGacugcaccgGCUCGUGGCa -3'
miRNA:   3'- -UGGCGGCuUGCGUcaag-----CGAGUACUG- -5'
26260 3' -54.5 NC_005345.2 + 47536 0.71 0.423277
Target:  5'- gACCGaccucaucaCCGAACGCgaccgcaaGGaaCGCUCGUGACg -3'
miRNA:   3'- -UGGC---------GGCUUGCG--------UCaaGCGAGUACUG- -5'
26260 3' -54.5 NC_005345.2 + 47107 0.66 0.714368
Target:  5'- cCCGCCGGgccGCGcCGGgccCGCUCGacgagGACg -3'
miRNA:   3'- uGGCGGCU---UGC-GUCaa-GCGAGUa----CUG- -5'
26260 3' -54.5 NC_005345.2 + 46389 0.7 0.47322
Target:  5'- gGCCGCCGcGCGUGGcgCGCUCcacaugcgGGCc -3'
miRNA:   3'- -UGGCGGCuUGCGUCaaGCGAGua------CUG- -5'
26260 3' -54.5 NC_005345.2 + 46308 0.66 0.703423
Target:  5'- cGCCGcCCGAGCGCAcgcugUCGgcCUCGcGGCg -3'
miRNA:   3'- -UGGC-GGCUUGCGUca---AGC--GAGUaCUG- -5'
26260 3' -54.5 NC_005345.2 + 45629 1.1 0.000835
Target:  5'- cACCGCCGAACGCAGUUCGCUCAUGACg -3'
miRNA:   3'- -UGGCGGCUUGCGUCAAGCGAGUACUG- -5'
26260 3' -54.5 NC_005345.2 + 45030 0.66 0.681327
Target:  5'- aGCCGCuCGAACGCcaacCGCUCggGGg -3'
miRNA:   3'- -UGGCG-GCUUGCGucaaGCGAGuaCUg -5'
26260 3' -54.5 NC_005345.2 + 44000 0.68 0.603043
Target:  5'- gGCCGCCGcGGCGC-GUUC-CUCcUGAUc -3'
miRNA:   3'- -UGGCGGC-UUGCGuCAAGcGAGuACUG- -5'
26260 3' -54.5 NC_005345.2 + 43982 0.66 0.714368
Target:  5'- aGCCuUCGAGgGCGGcgacgagUCGCUCGUGcACg -3'
miRNA:   3'- -UGGcGGCUUgCGUCa------AGCGAGUAC-UG- -5'
26260 3' -54.5 NC_005345.2 + 43102 0.71 0.413672
Target:  5'- cCCGCCGuAGCGCGGUgaGCUgcaGUGGCu -3'
miRNA:   3'- uGGCGGC-UUGCGUCAagCGAg--UACUG- -5'
26260 3' -54.5 NC_005345.2 + 42906 0.68 0.580756
Target:  5'- aACCGCCG---GUAG-UCGCUCggGGCg -3'
miRNA:   3'- -UGGCGGCuugCGUCaAGCGAGuaCUG- -5'
26260 3' -54.5 NC_005345.2 + 42531 0.67 0.6702
Target:  5'- cACCGCCGGGCGCaaccgccgccGGUccacaGCUCGUucgccugcGACa -3'
miRNA:   3'- -UGGCGGCUUGCG----------UCAag---CGAGUA--------CUG- -5'
26260 3' -54.5 NC_005345.2 + 41570 0.66 0.714368
Target:  5'- cGCuCGCCGugcuCGCGGgcgugcUCGgUCGUGAUg -3'
miRNA:   3'- -UG-GCGGCuu--GCGUCa-----AGCgAGUACUG- -5'
26260 3' -54.5 NC_005345.2 + 41511 0.67 0.636641
Target:  5'- cACCGucCCGAACGCGGagCGCgagCGUcucGGCg -3'
miRNA:   3'- -UGGC--GGCUUGCGUCaaGCGa--GUA---CUG- -5'
26260 3' -54.5 NC_005345.2 + 41321 0.7 0.47322
Target:  5'- aGCUGCCGAGCGCccugcGUcUCGCUCAc--- -3'
miRNA:   3'- -UGGCGGCUUGCGu----CA-AGCGAGUacug -5'
26260 3' -54.5 NC_005345.2 + 40826 0.69 0.547678
Target:  5'- cGCCGCCgGAACGCuGcugcugCGCgccgcCAUGGCg -3'
miRNA:   3'- -UGGCGG-CUUGCGuCaa----GCGa----GUACUG- -5'
26260 3' -54.5 NC_005345.2 + 40770 0.72 0.37663
Target:  5'- gGCCGCCGGcCGCGGUUCcacacCUCGccGACa -3'
miRNA:   3'- -UGGCGGCUuGCGUCAAGc----GAGUa-CUG- -5'
26260 3' -54.5 NC_005345.2 + 37501 0.7 0.495066
Target:  5'- cCCGCCGGGCGCGGgcugcggcgcggugCGCUCGc--- -3'
miRNA:   3'- uGGCGGCUUGCGUCaa------------GCGAGUacug -5'
26260 3' -54.5 NC_005345.2 + 36366 0.66 0.72523
Target:  5'- uUCGCCGcguACGCGGgcgCGCUCcgcGGCc -3'
miRNA:   3'- uGGCGGCu--UGCGUCaa-GCGAGua-CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.