miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26260 5' -60.8 NC_005345.2 + 8317 0.67 0.356818
Target:  5'- -gGCGGCGcgcagcagcagcguuCCGgcGGCGGUGCAcgcCCCGGu -3'
miRNA:   3'- gaCGCUGCu--------------GGC--CCGUCACGU---GGGCC- -5'
26260 5' -60.8 NC_005345.2 + 8737 0.66 0.443949
Target:  5'- -gGCGGCGAuCCGuacggacgcgucGGCGGUGUGgCUGGc -3'
miRNA:   3'- gaCGCUGCU-GGC------------CCGUCACGUgGGCC- -5'
26260 5' -60.8 NC_005345.2 + 9359 0.69 0.294973
Target:  5'- gCUGCgGGCGGCCGGGCucgaccacuacGG-GCAgCCGc -3'
miRNA:   3'- -GACG-CUGCUGGCCCG-----------UCaCGUgGGCc -5'
26260 5' -60.8 NC_005345.2 + 9628 0.75 0.116587
Target:  5'- cCUGCucGAuCGGCCGGGUccacucGG-GCACCCGGg -3'
miRNA:   3'- -GACG--CU-GCUGGCCCG------UCaCGUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 10144 0.72 0.178402
Target:  5'- -gGCGGCGGCCGcucuGCGGaGCGCCCGc -3'
miRNA:   3'- gaCGCUGCUGGCc---CGUCaCGUGGGCc -5'
26260 5' -60.8 NC_005345.2 + 10226 0.66 0.434608
Target:  5'- aUGCGggugaaguuccACGcCCcGGCGGU-CACCCGGg -3'
miRNA:   3'- gACGC-----------UGCuGGcCCGUCAcGUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 10293 0.66 0.425383
Target:  5'- aUGCGGCG--CGGGCuGUGggagcgGCCCGGc -3'
miRNA:   3'- gACGCUGCugGCCCGuCACg-----UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 10675 0.67 0.364227
Target:  5'- -gGCG-CGGCgCGGGaAGUGCccgcgcuguGCCCGGc -3'
miRNA:   3'- gaCGCuGCUG-GCCCgUCACG---------UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 12614 0.71 0.203025
Target:  5'- -cGCGcuCGGCCGGGCAcGgcucggGCACCgGGc -3'
miRNA:   3'- gaCGCu-GCUGGCCCGU-Ca-----CGUGGgCC- -5'
26260 5' -60.8 NC_005345.2 + 13034 0.74 0.129506
Target:  5'- aCUGCGGCGACCGgaucaccGGCAGcgGCAUcguguggaCCGGa -3'
miRNA:   3'- -GACGCUGCUGGC-------CCGUCa-CGUG--------GGCC- -5'
26260 5' -60.8 NC_005345.2 + 14380 0.71 0.203025
Target:  5'- gCU-CGGCGACCGGcCGGUGCcgAUCCGGc -3'
miRNA:   3'- -GAcGCUGCUGGCCcGUCACG--UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 14630 0.66 0.407287
Target:  5'- -cGCGAgGACCGGGa---GCACCucgCGGu -3'
miRNA:   3'- gaCGCUgCUGGCCCgucaCGUGG---GCC- -5'
26260 5' -60.8 NC_005345.2 + 14674 0.66 0.434608
Target:  5'- -gGCGGCGucgccgauGCCGGGCcGgccGUGCCCGu -3'
miRNA:   3'- gaCGCUGC--------UGGCCCGuCa--CGUGGGCc -5'
26260 5' -60.8 NC_005345.2 + 14764 0.66 0.416275
Target:  5'- gUGCu-CGACCGGGCucgucgacUGCAacgcCCCGGu -3'
miRNA:   3'- gACGcuGCUGGCCCGuc------ACGU----GGGCC- -5'
26260 5' -60.8 NC_005345.2 + 14814 0.66 0.416275
Target:  5'- -aGCGGCGGgCGcGGguGUGgucgaCGCCCGa -3'
miRNA:   3'- gaCGCUGCUgGC-CCguCAC-----GUGGGCc -5'
26260 5' -60.8 NC_005345.2 + 14928 0.66 0.414468
Target:  5'- -cGCGGCGGCugcagCGGGCGGcggcgaaggaucGCGCCgCGGc -3'
miRNA:   3'- gaCGCUGCUG-----GCCCGUCa-----------CGUGG-GCC- -5'
26260 5' -60.8 NC_005345.2 + 15369 0.66 0.398423
Target:  5'- -gGCGGCGAC--GGCAGcGCggggguacuugGCCCGGg -3'
miRNA:   3'- gaCGCUGCUGgcCCGUCaCG-----------UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 15654 0.71 0.192839
Target:  5'- -cGCaauGCGACCGGGCccgguGGUGaCACaCCGGg -3'
miRNA:   3'- gaCGc--UGCUGGCCCG-----UCAC-GUG-GGCC- -5'
26260 5' -60.8 NC_005345.2 + 16120 0.66 0.398423
Target:  5'- -aGCaGCGGCCGGcCGGcgGCGuCCCGGc -3'
miRNA:   3'- gaCGcUGCUGGCCcGUCa-CGU-GGGCC- -5'
26260 5' -60.8 NC_005345.2 + 16872 0.67 0.389683
Target:  5'- -cGCGguACGGCCGagcguggcGGCGGaagGCGCCCGu -3'
miRNA:   3'- gaCGC--UGCUGGC--------CCGUCa--CGUGGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.