miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26260 5' -60.8 NC_005345.2 + 383 0.67 0.347907
Target:  5'- -cGUGGCGAacaCGuGGCGaaggucGUGCACCCGcGg -3'
miRNA:   3'- gaCGCUGCUg--GC-CCGU------CACGUGGGC-C- -5'
26260 5' -60.8 NC_005345.2 + 646 0.69 0.267648
Target:  5'- cCUGCGGCguGAgCGGGaCcGUGCggaACCCGGc -3'
miRNA:   3'- -GACGCUG--CUgGCCC-GuCACG---UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 1088 0.68 0.316858
Target:  5'- cCU-CGACGGCgaCGaGCGGUGCGCgCCGGa -3'
miRNA:   3'- -GAcGCUGCUG--GCcCGUCACGUG-GGCC- -5'
26260 5' -60.8 NC_005345.2 + 1179 0.7 0.242405
Target:  5'- -cGCGGCGcACaCGGGCGGcucgGCAgUCCGGc -3'
miRNA:   3'- gaCGCUGC-UG-GCCCGUCa---CGU-GGGCC- -5'
26260 5' -60.8 NC_005345.2 + 3215 0.68 0.316109
Target:  5'- -gGCGAUGACagcggacaguuCGGGCAgcgcacuGUGCACgCGGc -3'
miRNA:   3'- gaCGCUGCUG-----------GCCCGU-------CACGUGgGCC- -5'
26260 5' -60.8 NC_005345.2 + 3430 0.67 0.356001
Target:  5'- -cGCGGCGG-CGGGCGGcgaUGCGggcCCCGa -3'
miRNA:   3'- gaCGCUGCUgGCCCGUC---ACGU---GGGCc -5'
26260 5' -60.8 NC_005345.2 + 3833 0.66 0.443949
Target:  5'- gCUGCGAgGuCgGcGGC-GUGCggACCCGGc -3'
miRNA:   3'- -GACGCUgCuGgC-CCGuCACG--UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 4284 0.67 0.364227
Target:  5'- -cGCGACGcgGCCGccGCGGgGCGCCuCGGa -3'
miRNA:   3'- gaCGCUGC--UGGCc-CGUCaCGUGG-GCC- -5'
26260 5' -60.8 NC_005345.2 + 4356 0.66 0.443948
Target:  5'- cCUGCcuCGGgCGGGCGG-GCcGCUCGGu -3'
miRNA:   3'- -GACGcuGCUgGCCCGUCaCG-UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 4918 0.66 0.425383
Target:  5'- gCUGCGGCaGCC--GCAcGUGCGCuCCGGc -3'
miRNA:   3'- -GACGCUGcUGGccCGU-CACGUG-GGCC- -5'
26260 5' -60.8 NC_005345.2 + 5208 0.73 0.144504
Target:  5'- -gGC-ACGGCCGGGCAGcucGCGgCCGGc -3'
miRNA:   3'- gaCGcUGCUGGCCCGUCa--CGUgGGCC- -5'
26260 5' -60.8 NC_005345.2 + 5310 0.69 0.259219
Target:  5'- --cCGuCGACCGGGCAGUacGUgaucagccugaucgACCCGGa -3'
miRNA:   3'- gacGCuGCUGGCCCGUCA--CG--------------UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 5442 0.67 0.371742
Target:  5'- -gGCGGCGcCCGGGUcggccguaggggcGGUGCcgagugaccgACCCGa -3'
miRNA:   3'- gaCGCUGCuGGCCCG-------------UCACG----------UGGGCc -5'
26260 5' -60.8 NC_005345.2 + 6609 0.77 0.079498
Target:  5'- -aGCuGugGACCGgcGGCGGuUGCGCCCGGc -3'
miRNA:   3'- gaCG-CugCUGGC--CCGUC-ACGUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 6640 0.68 0.316858
Target:  5'- gUGCGACGgcgucACCGaGCAGcUG-ACCCGGa -3'
miRNA:   3'- gACGCUGC-----UGGCcCGUC-ACgUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 7114 0.75 0.105738
Target:  5'- -cGCGACGuguggcgccgcgcgaACCGGGCGGgGCacgugGCCCGGg -3'
miRNA:   3'- gaCGCUGC---------------UGGCCCGUCaCG-----UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 7243 0.71 0.197875
Target:  5'- -gGCGACGACCaGGGCgacgacgagcAGcUGCucgacaGCCCGGa -3'
miRNA:   3'- gaCGCUGCUGG-CCCG----------UC-ACG------UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 7498 0.66 0.398423
Target:  5'- -aGUGGCgGGCCgccauucgguGGGC-GUGCugCCGGc -3'
miRNA:   3'- gaCGCUG-CUGG----------CCCGuCACGugGGCC- -5'
26260 5' -60.8 NC_005345.2 + 7549 0.66 0.425383
Target:  5'- gUGCGACGGCCGuGCAcgGCAUCaCGa -3'
miRNA:   3'- gACGCUGCUGGCcCGUcaCGUGG-GCc -5'
26260 5' -60.8 NC_005345.2 + 8082 0.66 0.401954
Target:  5'- -aGCaGGCGGCCGGGCugcaAGaGCacuuccgcaagaccgACCCGGc -3'
miRNA:   3'- gaCG-CUGCUGGCCCG----UCaCG---------------UGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.