miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26260 5' -60.8 NC_005345.2 + 6609 0.77 0.079498
Target:  5'- -aGCuGugGACCGgcGGCGGuUGCGCCCGGc -3'
miRNA:   3'- gaCG-CugCUGGC--CCGUC-ACGUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 5310 0.69 0.259219
Target:  5'- --cCGuCGACCGGGCAGUacGUgaucagccugaucgACCCGGa -3'
miRNA:   3'- gacGCuGCUGGCCCGUCA--CG--------------UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 30470 0.69 0.274282
Target:  5'- gCUGCGcGCGAucugcgUCGcGGUGGUGCGCCgGGu -3'
miRNA:   3'- -GACGC-UGCU------GGC-CCGUCACGUGGgCC- -5'
26260 5' -60.8 NC_005345.2 + 8737 0.66 0.443949
Target:  5'- -gGCGGCGAuCCGuacggacgcgucGGCGGUGUGgCUGGc -3'
miRNA:   3'- gaCGCUGCU-GGC------------CCGUCACGUgGGCC- -5'
26260 5' -60.8 NC_005345.2 + 5208 0.73 0.144504
Target:  5'- -gGC-ACGGCCGGGCAGcucGCGgCCGGc -3'
miRNA:   3'- gaCGcUGCUGGCCCGUCa--CGUgGGCC- -5'
26260 5' -60.8 NC_005345.2 + 35740 0.73 0.156466
Target:  5'- -cGCGGCGGCCGaacgaGCGGcgGCAuCCCGGg -3'
miRNA:   3'- gaCGCUGCUGGCc----CGUCa-CGU-GGGCC- -5'
26260 5' -60.8 NC_005345.2 + 48335 0.72 0.178402
Target:  5'- gUGUGACGGCCcccGGGCgagcaGGUGUaagcggGCCCGGu -3'
miRNA:   3'- gACGCUGCUGG---CCCG-----UCACG------UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 15654 0.71 0.192839
Target:  5'- -cGCaauGCGACCGGGCccgguGGUGaCACaCCGGg -3'
miRNA:   3'- gaCGc--UGCUGGCCCG-----UCAC-GUG-GGCC- -5'
26260 5' -60.8 NC_005345.2 + 14380 0.71 0.203025
Target:  5'- gCU-CGGCGACCGGcCGGUGCcgAUCCGGc -3'
miRNA:   3'- -GAcGCUGCUGGCCcGUCACG--UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 36609 0.7 0.25477
Target:  5'- aUGCagauGGCGGCCGGGCucGUGCcgcuGCgCGGg -3'
miRNA:   3'- gACG----CUGCUGGCCCGu-CACG----UGgGCC- -5'
26260 5' -60.8 NC_005345.2 + 40806 0.71 0.203025
Target:  5'- --aCGACGACCgGGGC-GUGCACcgccgCCGGa -3'
miRNA:   3'- gacGCUGCUGG-CCCGuCACGUG-----GGCC- -5'
26260 5' -60.8 NC_005345.2 + 7243 0.71 0.197875
Target:  5'- -gGCGACGACCaGGGCgacgacgagcAGcUGCucgacaGCCCGGa -3'
miRNA:   3'- gaCGCUGCUGG-CCCG----------UC-ACG------UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 7114 0.75 0.105738
Target:  5'- -cGCGACGuguggcgccgcgcgaACCGGGCGGgGCacgugGCCCGGg -3'
miRNA:   3'- gaCGCUGC---------------UGGCCCGUCaCG-----UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 22663 0.71 0.208291
Target:  5'- cCUGCgGACGGUCGGGCAGU-CGCUCGu -3'
miRNA:   3'- -GACG-CUGCUGGCCCGUCAcGUGGGCc -5'
26260 5' -60.8 NC_005345.2 + 44496 0.74 0.11978
Target:  5'- -gGCGACGGCCGaGGCAcaGCaggcgacgGCCCGGa -3'
miRNA:   3'- gaCGCUGCUGGC-CCGUcaCG--------UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 43792 0.71 0.192839
Target:  5'- cCUGgaGAUcGCCGGGCAGcGCGCCCa- -3'
miRNA:   3'- -GACg-CUGcUGGCCCGUCaCGUGGGcc -5'
26260 5' -60.8 NC_005345.2 + 40502 0.7 0.242405
Target:  5'- -cGCGACGAUCGGcGCcgaGGUGUACugcgacgccgCCGGa -3'
miRNA:   3'- gaCGCUGCUGGCC-CG---UCACGUG----------GGCC- -5'
26260 5' -60.8 NC_005345.2 + 646 0.69 0.267648
Target:  5'- cCUGCGGCguGAgCGGGaCcGUGCggaACCCGGc -3'
miRNA:   3'- -GACGCUG--CUgGCCC-GuCACG---UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 13034 0.74 0.129506
Target:  5'- aCUGCGGCGACCGgaucaccGGCAGcgGCAUcguguggaCCGGa -3'
miRNA:   3'- -GACGCUGCUGGC-------CCGUCa-CGUG--------GGCC- -5'
26260 5' -60.8 NC_005345.2 + 10144 0.72 0.178402
Target:  5'- -gGCGGCGGCCGcucuGCGGaGCGCCCGc -3'
miRNA:   3'- gaCGCUGCUGGCc---CGUCaCGUGGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.