miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26260 5' -60.8 NC_005345.2 + 46150 0.67 0.364227
Target:  5'- -cGCGGUGgguuccACCGGGCAGcccuccUGCACCCa- -3'
miRNA:   3'- gaCGCUGC------UGGCCCGUC------ACGUGGGcc -5'
26260 5' -60.8 NC_005345.2 + 34157 0.66 0.407287
Target:  5'- -gGCGGCGGCCccgaGG-AGUG-GCCCGGg -3'
miRNA:   3'- gaCGCUGCUGGc---CCgUCACgUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 18541 0.66 0.398423
Target:  5'- -gGCGGucUGAUCGGGCGGcUGCAgCUGa -3'
miRNA:   3'- gaCGCU--GCUGGCCCGUC-ACGUgGGCc -5'
26260 5' -60.8 NC_005345.2 + 7498 0.66 0.398423
Target:  5'- -aGUGGCgGGCCgccauucgguGGGC-GUGCugCCGGc -3'
miRNA:   3'- gaCGCUG-CUGG----------CCCGuCACGugGGCC- -5'
26260 5' -60.8 NC_005345.2 + 16120 0.66 0.398423
Target:  5'- -aGCaGCGGCCGGcCGGcgGCGuCCCGGc -3'
miRNA:   3'- gaCGcUGCUGGCCcGUCa-CGU-GGGCC- -5'
26260 5' -60.8 NC_005345.2 + 17144 0.67 0.381069
Target:  5'- -cGCGACGuugguCgGGGCGGUcGUGCCgaCGGg -3'
miRNA:   3'- gaCGCUGCu----GgCCCGUCA-CGUGG--GCC- -5'
26260 5' -60.8 NC_005345.2 + 33017 0.67 0.381069
Target:  5'- -cGuCGACGAUCGGGCucggccgcggGGUGCgguCCGGc -3'
miRNA:   3'- gaC-GCUGCUGGCCCG----------UCACGug-GGCC- -5'
26260 5' -60.8 NC_005345.2 + 23297 0.67 0.375961
Target:  5'- -gGCGACGGCCGGccguuGUccucgguccgcgucgGGUGCGCgCCGa -3'
miRNA:   3'- gaCGCUGCUGGCC-----CG---------------UCACGUG-GGCc -5'
26260 5' -60.8 NC_005345.2 + 31954 0.67 0.372583
Target:  5'- gUGCGG-GugCGGGUgcgGGUGCGgCUGGu -3'
miRNA:   3'- gACGCUgCugGCCCG---UCACGUgGGCC- -5'
26260 5' -60.8 NC_005345.2 + 14630 0.66 0.407287
Target:  5'- -cGCGAgGACCGGGa---GCACCucgCGGu -3'
miRNA:   3'- gaCGCUgCUGGCCCgucaCGUGG---GCC- -5'
26260 5' -60.8 NC_005345.2 + 20320 0.66 0.416275
Target:  5'- -cGCGuccACGGCgaUGGGCAG-GCGCgCGGu -3'
miRNA:   3'- gaCGC---UGCUG--GCCCGUCaCGUGgGCC- -5'
26260 5' -60.8 NC_005345.2 + 36784 0.66 0.416275
Target:  5'- gCUGCGagGCG-UCGGGCcccGUGCAgCCGa -3'
miRNA:   3'- -GACGC--UGCuGGCCCGu--CACGUgGGCc -5'
26260 5' -60.8 NC_005345.2 + 4356 0.66 0.443948
Target:  5'- cCUGCcuCGGgCGGGCGG-GCcGCUCGGu -3'
miRNA:   3'- -GACGcuGCUgGCCCGUCaCG-UGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 38382 0.66 0.443948
Target:  5'- gCUGUcucGACGGCC-GGCAG-GgGCUCGGc -3'
miRNA:   3'- -GACG---CUGCUGGcCCGUCaCgUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 31861 0.66 0.443948
Target:  5'- cCUGCGGCGAacgugggcaCGGGUucgGGUGCGgugagUUCGGg -3'
miRNA:   3'- -GACGCUGCUg--------GCCCG---UCACGU-----GGGCC- -5'
26260 5' -60.8 NC_005345.2 + 30501 0.66 0.443948
Target:  5'- gCUGCcggacaGCGACCcgcGGGCgagGGUGCugCCGc -3'
miRNA:   3'- -GACGc-----UGCUGG---CCCG---UCACGugGGCc -5'
26260 5' -60.8 NC_005345.2 + 10226 0.66 0.434608
Target:  5'- aUGCGggugaaguuccACGcCCcGGCGGU-CACCCGGg -3'
miRNA:   3'- gACGC-----------UGCuGGcCCGUCAcGUGGGCC- -5'
26260 5' -60.8 NC_005345.2 + 47102 0.66 0.425383
Target:  5'- -cGCGGCccGCCGGGCc--GCGCCgGGc -3'
miRNA:   3'- gaCGCUGc-UGGCCCGucaCGUGGgCC- -5'
26260 5' -60.8 NC_005345.2 + 25768 0.66 0.425383
Target:  5'- aUGCGGaagUCGGGCAGcucggGCGCCuCGGc -3'
miRNA:   3'- gACGCUgcuGGCCCGUCa----CGUGG-GCC- -5'
26260 5' -60.8 NC_005345.2 + 37032 0.66 0.425383
Target:  5'- -aGCGGC-ACCGGGCgAGccgGgAUCCGGc -3'
miRNA:   3'- gaCGCUGcUGGCCCG-UCa--CgUGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.